miRNA display CGI


Results 121 - 140 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28752 5' -64.9 NC_006146.1 + 43163 0.68 0.443354
Target:  5'- uCUUCUCCagGCUCUCCGGGCCca-GCCc -3'
miRNA:   3'- -GGGGAGG--UGAGGGGCCCGGaucCGGc -5'
28752 5' -64.9 NC_006146.1 + 44415 0.67 0.502549
Target:  5'- gCCUUCCucgagggGCUCCCgGGGUCUGGcacccguGCCa -3'
miRNA:   3'- gGGGAGG-------UGAGGGgCCCGGAUC-------CGGc -5'
28752 5' -64.9 NC_006146.1 + 44580 0.7 0.349327
Target:  5'- uUCCUCCugGC-CCCCGGGCCgcuGCCu -3'
miRNA:   3'- gGGGAGG--UGaGGGGCCCGGaucCGGc -5'
28752 5' -64.9 NC_006146.1 + 46209 0.66 0.587481
Target:  5'- uCUCCUCCcagGCUUCCUGGaggaaaaugaaGCCggagggaGGGCCGg -3'
miRNA:   3'- -GGGGAGG---UGAGGGGCC-----------CGGa------UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 46388 0.72 0.258727
Target:  5'- cCCCCgUCC-CUCgCCaGGGCCgagaccAGGCCGa -3'
miRNA:   3'- -GGGG-AGGuGAGgGG-CCCGGa-----UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 46764 0.66 0.559337
Target:  5'- uCgCCUCCcgaCCCCGGGCggauggcuGGCCGg -3'
miRNA:   3'- -GgGGAGGugaGGGGCCCGgau-----CCGGC- -5'
28752 5' -64.9 NC_006146.1 + 47190 0.67 0.504344
Target:  5'- gCCCgCCGCcgCCCCGaGcGCC-AGGCCc -3'
miRNA:   3'- gGGGaGGUGa-GGGGC-C-CGGaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 47750 0.67 0.477725
Target:  5'- cCUCCUCgCGCgCCCUGgcgaguacGGCCUccaGGGCCGu -3'
miRNA:   3'- -GGGGAG-GUGaGGGGC--------CCGGA---UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 47861 0.74 0.206468
Target:  5'- uCUCCUCCAg-CgCCCGGaCCUGGGCCGc -3'
miRNA:   3'- -GGGGAGGUgaG-GGGCCcGGAUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 49237 0.73 0.216134
Target:  5'- gCCCUCCugcAC-CUCCGGGuCCaGGGCCGg -3'
miRNA:   3'- gGGGAGG---UGaGGGGCCC-GGaUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 49698 0.66 0.578065
Target:  5'- cCUCCUCCACccUCUCCagGGGCCacggaauGCCGg -3'
miRNA:   3'- -GGGGAGGUG--AGGGG--CCCGGauc----CGGC- -5'
28752 5' -64.9 NC_006146.1 + 51640 0.71 0.321303
Target:  5'- uCCaggCUCUggACUCCCaggGGGCCaGGGCCGg -3'
miRNA:   3'- -GGg--GAGG--UGAGGGg--CCCGGaUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 53003 0.74 0.197179
Target:  5'- gCCCCUCUucuggCCCUGGGCCUcacgcggcuGGCCGc -3'
miRNA:   3'- -GGGGAGGuga--GGGGCCCGGAu--------CCGGC- -5'
28752 5' -64.9 NC_006146.1 + 53301 0.68 0.451818
Target:  5'- uCUCCUCCuCUCCCUGGccggaguccgaGCCcgaggAGGCCc -3'
miRNA:   3'- -GGGGAGGuGAGGGGCC-----------CGGa----UCCGGc -5'
28752 5' -64.9 NC_006146.1 + 54630 0.75 0.167491
Target:  5'- gCCUCUCUgguccggugGCUCCCCGGGCauuggagGGGCCc -3'
miRNA:   3'- -GGGGAGG---------UGAGGGGCCCGga-----UCCGGc -5'
28752 5' -64.9 NC_006146.1 + 54786 0.68 0.449269
Target:  5'- cCCCUUCCACUuguuuuacggggacCCUCGGGU---GGCCGc -3'
miRNA:   3'- -GGGGAGGUGA--------------GGGGCCCGgauCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 55364 0.67 0.486523
Target:  5'- cCCCCgccaCCGCgcgcgggacgCCCgGGGCaccgAGGCCa -3'
miRNA:   3'- -GGGGa---GGUGa---------GGGgCCCGga--UCCGGc -5'
28752 5' -64.9 NC_006146.1 + 55881 0.74 0.199007
Target:  5'- cCCCCUCCccuGCUCCCCGcuccaccagcuccacGGCCauGGCCu -3'
miRNA:   3'- -GGGGAGG---UGAGGGGC---------------CCGGauCCGGc -5'
28752 5' -64.9 NC_006146.1 + 56058 0.66 0.550036
Target:  5'- gCCCCUCCcgcgggaagGCgucCCaCCGGGCCaagUAGGUg- -3'
miRNA:   3'- -GGGGAGG---------UGa--GG-GGCCCGG---AUCCGgc -5'
28752 5' -64.9 NC_006146.1 + 56564 0.66 0.550036
Target:  5'- cCCCCgUCCAC-CUCCGucaggggcGGCCgGGcGCCGa -3'
miRNA:   3'- -GGGG-AGGUGaGGGGC--------CCGGaUC-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.