miRNA display CGI


Results 61 - 80 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28752 5' -64.9 NC_006146.1 + 136780 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 136748 0.67 0.504344
Target:  5'- aCCCC-CCACccUCgCCGGGgCUccgggAGGCCc -3'
miRNA:   3'- -GGGGaGGUG--AGgGGCCCgGA-----UCCGGc -5'
28752 5' -64.9 NC_006146.1 + 136734 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 136688 0.67 0.501653
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC--GGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGauCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 136642 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 136595 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 136549 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 136502 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 136456 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 136409 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 136363 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 136316 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 136270 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 136223 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 136177 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 136130 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 136084 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 136037 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 135991 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 135944 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.