Results 81 - 100 of 314 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28752 | 5' | -64.9 | NC_006146.1 | + | 135898 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 135851 | 0.71 | 0.305967 |
Target: 5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3' miRNA: 3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 135805 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 135758 | 0.71 | 0.305967 |
Target: 5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3' miRNA: 3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 135725 | 0.7 | 0.356599 |
Target: 5'- gCCCgUCCuggagCUCgGGGCCggGGGCCGg -3' miRNA: 3'- -GGGgAGGuga--GGGgCCCGGa-UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 135666 | 0.71 | 0.305967 |
Target: 5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3' miRNA: 3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 135620 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 135573 | 0.71 | 0.305967 |
Target: 5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3' miRNA: 3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 135527 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 135480 | 0.71 | 0.305967 |
Target: 5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3' miRNA: 3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 135434 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 135387 | 0.71 | 0.305967 |
Target: 5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3' miRNA: 3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 135341 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 135294 | 0.71 | 0.305967 |
Target: 5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3' miRNA: 3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 135248 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 135201 | 0.71 | 0.305967 |
Target: 5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3' miRNA: 3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 135155 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 133338 | 0.66 | 0.540784 |
Target: 5'- aCCCCUagCCAacaaguCUCUCCGGGUCUGcuuGCCu -3' miRNA: 3'- -GGGGA--GGU------GAGGGGCCCGGAUc--CGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 131062 | 0.68 | 0.451818 |
Target: 5'- cCCCCgccggcCCACUgugcggccgaggCCgCCGGGCCgucaacGGCCGc -3' miRNA: 3'- -GGGGa-----GGUGA------------GG-GGCCCGGau----CCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 130440 | 0.66 | 0.587481 |
Target: 5'- cCCCCUUCAC-CCaCCaGGCCauuGCCGc -3' miRNA: 3'- -GGGGAGGUGaGG-GGcCCGGaucCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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