miRNA display CGI


Results 101 - 120 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28752 5' -64.9 NC_006146.1 + 129841 0.74 0.183929
Target:  5'- cUCCCUCCA--CCCCGaGGCCcccaGGGCCGc -3'
miRNA:   3'- -GGGGAGGUgaGGGGC-CCGGa---UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 129554 0.67 0.504344
Target:  5'- aCCaCCgCCAggCCCUGGGCCagaUAGGuuGg -3'
miRNA:   3'- -GG-GGaGGUgaGGGGCCCGG---AUCCggC- -5'
28752 5' -64.9 NC_006146.1 + 129040 0.71 0.314565
Target:  5'- aCCUCUUCACgaggCCCCGGuaGCCccuGGCCa -3'
miRNA:   3'- -GGGGAGGUGa---GGGGCC--CGGau-CCGGc -5'
28752 5' -64.9 NC_006146.1 + 128245 0.69 0.394532
Target:  5'- gCUCUUCCGCUaCCuCUGGGCCcacuacgugAGGCCc -3'
miRNA:   3'- -GGGGAGGUGA-GG-GGCCCGGa--------UCCGGc -5'
28752 5' -64.9 NC_006146.1 + 127827 0.72 0.253049
Target:  5'- uCCgCCUCCAgcCUCCCCuggaggguGGGCUUGGGCa- -3'
miRNA:   3'- -GG-GGAGGU--GAGGGG--------CCCGGAUCCGgc -5'
28752 5' -64.9 NC_006146.1 + 127705 0.7 0.328148
Target:  5'- gCCCCaUCCccgcCUCCCgcgaggagcugaUGGGgCUGGGCCGg -3'
miRNA:   3'- -GGGG-AGGu---GAGGG------------GCCCgGAUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 127552 0.66 0.567745
Target:  5'- cCCCCUgCCacgggcugcgccuGCUggCCCUGGGCggccgAGGCCGc -3'
miRNA:   3'- -GGGGA-GG-------------UGA--GGGGCCCGga---UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 127321 0.68 0.469006
Target:  5'- cUCCCgccCCGCUCCCCGGGaacgCUcAGuacGCCGu -3'
miRNA:   3'- -GGGGa--GGUGAGGGGCCCg---GA-UC---CGGC- -5'
28752 5' -64.9 NC_006146.1 + 126786 0.71 0.282483
Target:  5'- cCCCCUCC--UCgCCGGGCagccgGGGCCu -3'
miRNA:   3'- -GGGGAGGugAGgGGCCCGga---UCCGGc -5'
28752 5' -64.9 NC_006146.1 + 126523 0.7 0.363978
Target:  5'- gCCCCacaCGCcCCCCGGGCggGGGUCu -3'
miRNA:   3'- -GGGGag-GUGaGGGGCCCGgaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 126211 0.66 0.567745
Target:  5'- gUCCCUCaucguccucCUCUCCGGGCCcGGagucacuGCCGg -3'
miRNA:   3'- -GGGGAGgu-------GAGGGGCCCGGaUC-------CGGC- -5'
28752 5' -64.9 NC_006146.1 + 125229 0.66 0.591255
Target:  5'- gCCCUUCCGCUCCCUGgcggagacGGUCUcccuggauuuuaugaAGGaCCu -3'
miRNA:   3'- -GGGGAGGUGAGGGGC--------CCGGA---------------UCC-GGc -5'
28752 5' -64.9 NC_006146.1 + 124181 0.7 0.356599
Target:  5'- -gCCUCCGCccgCCUCGGaGCCgccgcGGCCGa -3'
miRNA:   3'- ggGGAGGUGa--GGGGCC-CGGau---CCGGC- -5'
28752 5' -64.9 NC_006146.1 + 123643 0.67 0.51336
Target:  5'- -aCCUCguCa-CCCGGGCCagGGGCCa -3'
miRNA:   3'- ggGGAGguGagGGGCCCGGa-UCCGGc -5'
28752 5' -64.9 NC_006146.1 + 123243 0.69 0.379049
Target:  5'- aCCCUggCCGCcgCgCUGGGCC-GGGCCGc -3'
miRNA:   3'- -GGGGa-GGUGa-GgGGCCCGGaUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 123174 0.72 0.270395
Target:  5'- gCCCCUCCAagacCUCCCCaaucucgaGGGCCgagcacAGGgCGg -3'
miRNA:   3'- -GGGGAGGU----GAGGGG--------CCCGGa-----UCCgGC- -5'
28752 5' -64.9 NC_006146.1 + 122701 0.7 0.335101
Target:  5'- gCCCUCCAgUCCCCGGauGCCaa-GUCGg -3'
miRNA:   3'- gGGGAGGUgAGGGGCC--CGGaucCGGC- -5'
28752 5' -64.9 NC_006146.1 + 121124 0.75 0.17969
Target:  5'- gCCCCUCCugagacacaucaGCcggCgUCUGGGCCUGGGCCGc -3'
miRNA:   3'- -GGGGAGG------------UGa--G-GGGCCCGGAUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 119737 0.67 0.495397
Target:  5'- cCCCUUCCACaCCCacagCGGcGCCUcuGCCGc -3'
miRNA:   3'- -GGGGAGGUGaGGG----GCC-CGGAucCGGC- -5'
28752 5' -64.9 NC_006146.1 + 119317 0.71 0.282483
Target:  5'- gCCCCUCUgGCUcCCCCGGGCCccucccGGCgGc -3'
miRNA:   3'- -GGGGAGG-UGA-GGGGCCCGGau----CCGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.