miRNA display CGI


Results 61 - 80 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28752 5' -64.9 NC_006146.1 + 26122 0.72 0.276387
Target:  5'- cCCCCUCagcuuguCUCCCCaccGGGUCcaucAGGCCGg -3'
miRNA:   3'- -GGGGAGgu-----GAGGGG---CCCGGa---UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 17954 0.71 0.288686
Target:  5'- gCCCUCCAggCCuCCGaGGCCccAGGCCu -3'
miRNA:   3'- gGGGAGGUgaGG-GGC-CCGGa-UCCGGc -5'
28752 5' -64.9 NC_006146.1 + 27733 0.77 0.122822
Target:  5'- uCCCCU-CGC-CCCUGGGCCUcAGGCCc -3'
miRNA:   3'- -GGGGAgGUGaGGGGCCCGGA-UCCGGc -5'
28752 5' -64.9 NC_006146.1 + 54630 0.75 0.167491
Target:  5'- gCCUCUCUgguccggugGCUCCCCGGGCauuggagGGGCCc -3'
miRNA:   3'- -GGGGAGG---------UGAGGGGCCCGga-----UCCGGc -5'
28752 5' -64.9 NC_006146.1 + 23163 0.75 0.167491
Target:  5'- cCCCCUCCucucuccCUCCCCGaGGCCccGGCUc -3'
miRNA:   3'- -GGGGAGGu------GAGGGGC-CCGGauCCGGc -5'
28752 5' -64.9 NC_006146.1 + 117527 0.75 0.17969
Target:  5'- gUCUCacgCCuCUCCCUcgGGGCCUGGGCCGc -3'
miRNA:   3'- -GGGGa--GGuGAGGGG--CCCGGAUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 47861 0.74 0.206468
Target:  5'- uCUCCUCCAg-CgCCCGGaCCUGGGCCGc -3'
miRNA:   3'- -GGGGAGGUgaG-GGGCCcGGAUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 22913 0.73 0.229276
Target:  5'- cCCCCUCCACcccagucccccccCCCCGcuuucGGCCUcucgguccaccAGGCCGg -3'
miRNA:   3'- -GGGGAGGUGa------------GGGGC-----CCGGA-----------UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 25990 0.73 0.234508
Target:  5'- cCCCCUCCACcccagucccccccCCCCGcuuucGGCCUcucggguccaccAGGCCGg -3'
miRNA:   3'- -GGGGAGGUGa------------GGGGC-----CCGGA------------UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 123174 0.72 0.270395
Target:  5'- gCCCCUCCAagacCUCCCCaaucucgaGGGCCgagcacAGGgCGg -3'
miRNA:   3'- -GGGGAGGU----GAGGGG--------CCCGGa-----UCCgGC- -5'
28752 5' -64.9 NC_006146.1 + 25728 0.71 0.321303
Target:  5'- -aCCUCagggugcCUCCCCGGGuCCcAGGCCa -3'
miRNA:   3'- ggGGAGgu-----GAGGGGCCC-GGaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 16494 0.71 0.321303
Target:  5'- -aCCUCagggugcCUCCCCGGGuCCcAGGCCa -3'
miRNA:   3'- ggGGAGgu-----GAGGGGCCC-GGaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 135294 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 135573 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 136130 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 136409 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 136873 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 137152 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 167239 0.71 0.307935
Target:  5'- cUCCCgcggCCAgUCCCUggaugucggggaGGGCCcgGGGCCGc -3'
miRNA:   3'- -GGGGa---GGUgAGGGG------------CCCGGa-UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 170035 0.71 0.307935
Target:  5'- cUCCCgcggCCAgUCCCUggaugucggggaGGGCCcgGGGCCGc -3'
miRNA:   3'- -GGGGa---GGUgAGGGG------------CCCGGa-UCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.