miRNA display CGI


Results 101 - 120 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28752 5' -64.9 NC_006146.1 + 22281 0.69 0.41042
Target:  5'- aUCCUCCGagaCUCCGGGCCccaaggcGGCCGc -3'
miRNA:   3'- gGGGAGGUga-GGGGCCCGGau-----CCGGC- -5'
28752 5' -64.9 NC_006146.1 + 65712 0.68 0.43498
Target:  5'- aCCCC-CgGCUCCCCGG-CCccGGUCa -3'
miRNA:   3'- -GGGGaGgUGAGGGGCCcGGauCCGGc -5'
28752 5' -64.9 NC_006146.1 + 137870 0.68 0.43498
Target:  5'- gUCCCgggCCcCgCCCCGGGCCggcaggGGGUCc -3'
miRNA:   3'- -GGGGa--GGuGaGGGGCCCGGa-----UCCGGc -5'
28752 5' -64.9 NC_006146.1 + 14083 0.68 0.43498
Target:  5'- uCCCCaCCcCUCCCCGGccacCCcAGGCCc -3'
miRNA:   3'- -GGGGaGGuGAGGGGCCc---GGaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 17161 0.68 0.43498
Target:  5'- uCCCCaCCcCUCCCCGGccacCCcAGGCCc -3'
miRNA:   3'- -GGGGaGGuGAGGGGCCc---GGaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 19572 0.71 0.321303
Target:  5'- -aCCUCagggugcCUCCCCGGGuCCcAGGCCa -3'
miRNA:   3'- ggGGAGgu-----GAGGGGCCC-GGaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 159873 0.71 0.314565
Target:  5'- -aCCUCCcugguCUCCUCgcagaGGGCCUcgAGGCCGg -3'
miRNA:   3'- ggGGAGGu----GAGGGG-----CCCGGA--UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 22913 0.73 0.229276
Target:  5'- cCCCCUCCACcccagucccccccCCCCGcuuucGGCCUcucgguccaccAGGCCGg -3'
miRNA:   3'- -GGGGAGGUGa------------GGGGC-----CCGGA-----------UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 19835 0.73 0.234508
Target:  5'- cCCCCUCCACcccagucccccccCCCCGcuuucGGCCUcucggguccaccAGGCCGg -3'
miRNA:   3'- -GGGGAGGUGa------------GGGGC-----CCGGA------------UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 123174 0.72 0.270395
Target:  5'- gCCCCUCCAagacCUCCCCaaucucgaGGGCCgagcacAGGgCGg -3'
miRNA:   3'- -GGGGAGGU----GAGGGG--------CCCGGa-----UCCgGC- -5'
28752 5' -64.9 NC_006146.1 + 19966 0.72 0.276387
Target:  5'- cCCCCUCagcuuguCUCCCCaccGGGUCcaucAGGCCGg -3'
miRNA:   3'- -GGGGAGgu-----GAGGGG---CCCGGa---UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 119317 0.71 0.282483
Target:  5'- gCCCCUCUgGCUcCCCCGGGCCccucccGGCgGc -3'
miRNA:   3'- -GGGGAGG-UGA-GGGGCCCGGau----CCGgC- -5'
28752 5' -64.9 NC_006146.1 + 62820 0.71 0.301411
Target:  5'- gCCUCUCUugUgCCUGuGGCCcAGGCUGg -3'
miRNA:   3'- -GGGGAGGugAgGGGC-CCGGaUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 135387 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 135666 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 136223 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 136502 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 136966 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 137245 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 168171 0.71 0.307935
Target:  5'- cUCCCgcggCCAgUCCCUggaugucggggaGGGCCcgGGGCCGc -3'
miRNA:   3'- -GGGGa---GGUgAGGGG------------CCCGGa-UCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.