miRNA display CGI


Results 121 - 140 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28752 5' -64.9 NC_006146.1 + 135944 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 136037 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 127321 0.68 0.469006
Target:  5'- cUCCCgccCCGCUCCCCGGGaacgCUcAGuacGCCGu -3'
miRNA:   3'- -GGGGa--GGUGAGGGGCCCg---GA-UC---CGGC- -5'
28752 5' -64.9 NC_006146.1 + 147437 0.68 0.46037
Target:  5'- aCCUggCCACggCCaGGGCCUcguAGGCCGa -3'
miRNA:   3'- gGGGa-GGUGagGGgCCCGGA---UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 131062 0.68 0.451818
Target:  5'- cCCCCgccggcCCACUgugcggccgaggCCgCCGGGCCgucaacGGCCGc -3'
miRNA:   3'- -GGGGa-----GGUGA------------GG-GGCCCGGau----CCGGC- -5'
28752 5' -64.9 NC_006146.1 + 136966 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 137338 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 167239 0.71 0.307935
Target:  5'- cUCCCgcggCCAgUCCCUggaugucggggaGGGCCcgGGGCCGc -3'
miRNA:   3'- -GGGGa---GGUgAGGGG------------CCCGGa-UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 13416 0.71 0.321303
Target:  5'- -aCCUCagggugcCUCCCCGGGuCCcAGGCCa -3'
miRNA:   3'- ggGGAGgu-----GAGGGGCCC-GGaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 22650 0.71 0.321303
Target:  5'- -aCCUCagggugcCUCCCCGGGuCCcAGGCCa -3'
miRNA:   3'- ggGGAGgu-----GAGGGGCCC-GGaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 127705 0.7 0.328148
Target:  5'- gCCCCaUCCccgcCUCCCgcgaggagcugaUGGGgCUGGGCCGg -3'
miRNA:   3'- -GGGG-AGGu---GAGGG------------GCCCgGAUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 20187 0.7 0.335101
Target:  5'- gCCCCgUCCACccugUCCCCcgcaGGCC-AGGCCc -3'
miRNA:   3'- -GGGG-AGGUG----AGGGGc---CCGGaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 44580 0.7 0.349327
Target:  5'- uUCCUCCugGC-CCCCGGGCCgcuGCCu -3'
miRNA:   3'- gGGGAGG--UGaGGGGCCCGGaucCGGc -5'
28752 5' -64.9 NC_006146.1 + 81750 0.69 0.378285
Target:  5'- gCCCUuacaggaUCCAC-CCCCGGGCUUccgggAGGCa- -3'
miRNA:   3'- -GGGG-------AGGUGaGGGGCCCGGA-----UCCGgc -5'
28752 5' -64.9 NC_006146.1 + 139219 0.69 0.394532
Target:  5'- gUCCC-CCACccuUCCCUGGucCCUGGGCUGu -3'
miRNA:   3'- -GGGGaGGUG---AGGGGCCc-GGAUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 24109 0.69 0.394532
Target:  5'- gCCCUCCagGCcCUCCGaGGCCccAGGCCu -3'
miRNA:   3'- gGGGAGG--UGaGGGGC-CCGGa-UCCGGc -5'
28752 5' -64.9 NC_006146.1 + 25359 0.69 0.41042
Target:  5'- aUCCUCCGagaCUCCGGGCCccaaggcGGCCGc -3'
miRNA:   3'- gGGGAGGUga-GGGGCCCGGau-----CCGGC- -5'
28752 5' -64.9 NC_006146.1 + 65712 0.68 0.43498
Target:  5'- aCCCC-CgGCUCCCCGG-CCccGGUCa -3'
miRNA:   3'- -GGGGaGgUGAGGGGCCcGGauCCGGc -5'
28752 5' -64.9 NC_006146.1 + 17161 0.68 0.43498
Target:  5'- uCCCCaCCcCUCCCCGGccacCCcAGGCCc -3'
miRNA:   3'- -GGGGaGGuGAGGGGCCc---GGaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 26395 0.68 0.43498
Target:  5'- uCCCCaCCcCUCCCCGGccacCCcAGGCCc -3'
miRNA:   3'- -GGGGaGGuGAGGGGCCc---GGaUCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.