Results 141 - 160 of 314 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28752 | 5' | -64.9 | NC_006146.1 | + | 137199 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 137106 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 153950 | 0.67 | 0.495397 |
Target: 5'- gCCCgCCGCUCCCCguuGGGCacGGuGCCu -3' miRNA: 3'- gGGGaGGUGAGGGG---CCCGgaUC-CGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 55364 | 0.67 | 0.486523 |
Target: 5'- cCCCCgccaCCGCgcgcgggacgCCCgGGGCaccgAGGCCa -3' miRNA: 3'- -GGGGa---GGUGa---------GGGgCCCGga--UCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 93604 | 0.68 | 0.446729 |
Target: 5'- aCCCgCCggGCUCCUgGGGCUgcuguccuccccggAGGCCGa -3' miRNA: 3'- gGGGaGG--UGAGGGgCCCGGa-------------UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 26395 | 0.68 | 0.43498 |
Target: 5'- uCCCCaCCcCUCCCCGGccacCCcAGGCCc -3' miRNA: 3'- -GGGGaGGuGAGGGGCCc---GGaUCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 14083 | 0.68 | 0.43498 |
Target: 5'- uCCCCaCCcCUCCCCGGccacCCcAGGCCc -3' miRNA: 3'- -GGGGaGGuGAGGGGCCc---GGaUCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 65712 | 0.68 | 0.43498 |
Target: 5'- aCCCC-CgGCUCCCCGG-CCccGGUCa -3' miRNA: 3'- -GGGGaGgUGAGGGGCCcGGauCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 19203 | 0.69 | 0.41042 |
Target: 5'- aUCCUCCGagaCUCCGGGCCccaaggcGGCCGc -3' miRNA: 3'- gGGGAGGUga-GGGGCCCGGau-----CCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 106666 | 0.69 | 0.41042 |
Target: 5'- gCCCCUCC-CgCCCC-GGCCcAGGCg- -3' miRNA: 3'- -GGGGAGGuGaGGGGcCCGGaUCCGgc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 44415 | 0.67 | 0.502549 |
Target: 5'- gCCUUCCucgagggGCUCCCgGGGUCUGGcacccguGCCa -3' miRNA: 3'- gGGGAGG-------UGAGGGgCCCGGAUC-------CGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 135155 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 136827 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 136734 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 136549 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 136456 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 136084 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 135991 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 135805 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 135620 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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