Results 41 - 60 of 314 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28752 | 5' | -64.9 | NC_006146.1 | + | 91747 | 0.66 | 0.568682 |
Target: 5'- -gCCUCCGUUCUCCGGGUucUUGGGUgGg -3' miRNA: 3'- ggGGAGGUGAGGGGCCCG--GAUCCGgC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 110006 | 0.66 | 0.568682 |
Target: 5'- --gCUCCuggaUCCaCUGGGCCccAGGCCGg -3' miRNA: 3'- gggGAGGug--AGG-GGCCCGGa-UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 137574 | 0.66 | 0.568682 |
Target: 5'- gCCCCggagcacCCGgaCCCCGGaGCCccAGGaCCGa -3' miRNA: 3'- -GGGGa------GGUgaGGGGCC-CGGa-UCC-GGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 10997 | 0.66 | 0.587481 |
Target: 5'- gCCCC-CCAuCUUCgaGGGCCccGGCCu -3' miRNA: 3'- -GGGGaGGU-GAGGggCCCGGauCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 18358 | 0.66 | 0.587481 |
Target: 5'- aCCCCUUUgguggcauGCUCaCCCuGGuCCUGguGGCCGg -3' miRNA: 3'- -GGGGAGG--------UGAG-GGGcCC-GGAU--CCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 823 | 0.66 | 0.538018 |
Target: 5'- gCCCCUCCcgccggccauccccACgcgcggCCCCGGGCCcuccCCGa -3' miRNA: 3'- -GGGGAGG--------------UGa-----GGGGCCCGGauccGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 42723 | 0.67 | 0.531584 |
Target: 5'- cCCCCUgggCCGCcUCCCGGcgucgcugcaucGCCUgcggcagcaGGGCCGa -3' miRNA: 3'- -GGGGA---GGUGaGGGGCC------------CGGA---------UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 103671 | 0.67 | 0.486523 |
Target: 5'- -gCCUCCgugGCUUCCUGuGCCU-GGCCGg -3' miRNA: 3'- ggGGAGG---UGAGGGGCcCGGAuCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 168131 | 0.67 | 0.486523 |
Target: 5'- gUCUUCC-CUgacaUCCGGGCUUGGGCCu -3' miRNA: 3'- gGGGAGGuGAg---GGGCCCGGAUCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 33026 | 0.67 | 0.495397 |
Target: 5'- cCCCCUgCCGg-CCCgGGGCg-GGGCCc -3' miRNA: 3'- -GGGGA-GGUgaGGGgCCCGgaUCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 118551 | 0.67 | 0.498967 |
Target: 5'- aCCC-CCACUgccaaaaggacgccgCCCCGGGCaccccGGCCc -3' miRNA: 3'- gGGGaGGUGA---------------GGGGCCCGgau--CCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 129554 | 0.67 | 0.504344 |
Target: 5'- aCCaCCgCCAggCCCUGGGCCagaUAGGuuGg -3' miRNA: 3'- -GG-GGaGGUgaGGGGCCCGG---AUCCggC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 136748 | 0.67 | 0.504344 |
Target: 5'- aCCCC-CCACccUCgCCGGGgCUccgggAGGCCc -3' miRNA: 3'- -GGGGaGGUG--AGgGGCCCgGA-----UCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 18843 | 0.67 | 0.51336 |
Target: 5'- -gCUUCCAgaCCCCGGGCgCU--GCCGg -3' miRNA: 3'- ggGGAGGUgaGGGGCCCG-GAucCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 101280 | 0.67 | 0.51336 |
Target: 5'- gCCC-CCAgUaCCCCGGGgaCgUGGGCCu -3' miRNA: 3'- gGGGaGGUgA-GGGGCCC--GgAUCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 123643 | 0.67 | 0.51336 |
Target: 5'- -aCCUCguCa-CCCGGGCCagGGGCCa -3' miRNA: 3'- ggGGAGguGagGGGCCCGGa-UCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 27597 | 0.67 | 0.52153 |
Target: 5'- gCCUUCCaagacagACUCUCCGGGUCcacuggguGGCCa -3' miRNA: 3'- gGGGAGG-------UGAGGGGCCCGGau------CCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 115101 | 0.67 | 0.522441 |
Target: 5'- cCUCUUCCACcgCCCCGaGUCgcuGGCCa -3' miRNA: 3'- -GGGGAGGUGa-GGGGCcCGGau-CCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 81213 | 0.67 | 0.522441 |
Target: 5'- aUCCCaggCCGUUCCCCGGGCCccuuccGUCGg -3' miRNA: 3'- -GGGGa--GGUGAGGGGCCCGGauc---CGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 42954 | 0.67 | 0.531584 |
Target: 5'- gCCCUCCg--CCCCGGGCac--GCUGa -3' miRNA: 3'- gGGGAGGugaGGGGCCCGgaucCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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