miRNA display CGI


Results 61 - 80 of 314 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28752 5' -64.9 NC_006146.1 + 27597 0.67 0.52153
Target:  5'- gCCUUCCaagacagACUCUCCGGGUCcacuggguGGCCa -3'
miRNA:   3'- gGGGAGG-------UGAGGGGCCCGGau------CCGGc -5'
28752 5' -64.9 NC_006146.1 + 123643 0.67 0.51336
Target:  5'- -aCCUCguCa-CCCGGGCCagGGGCCa -3'
miRNA:   3'- ggGGAGguGagGGGCCCGGa-UCCGGc -5'
28752 5' -64.9 NC_006146.1 + 23933 0.67 0.47685
Target:  5'- gCCCCUCCugccccaagggcgGCgacuuuccCCCCGGGUCgggugggGGaGCCGg -3'
miRNA:   3'- -GGGGAGG-------------UGa-------GGGGCCCGGa------UC-CGGC- -5'
28752 5' -64.9 NC_006146.1 + 157512 0.68 0.46037
Target:  5'- gCUCCUCCG-UCCUCuggacuagGGGcCCUGGGCCc -3'
miRNA:   3'- -GGGGAGGUgAGGGG--------CCC-GGAUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 154434 0.68 0.46037
Target:  5'- gCUCCUCCG-UCCUCuggacuagGGGcCCUGGGCCc -3'
miRNA:   3'- -GGGGAGGUgAGGGG--------CCC-GGAUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 151356 0.68 0.46037
Target:  5'- gCUCCUCCG-UCCUCuggacuagGGGcCCUGGGCCc -3'
miRNA:   3'- -GGGGAGGUgAGGGG--------CCC-GGAUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 148278 0.68 0.46037
Target:  5'- gCUCCUCCG-UCCUCuggacuagGGGcCCUGGGCCc -3'
miRNA:   3'- -GGGGAGGUgAGGGG--------CCC-GGAUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 145200 0.68 0.46037
Target:  5'- gCUCCUCCG-UCCUCuggacuagGGGcCCUGGGCCc -3'
miRNA:   3'- -GGGGAGGUgAGGGG--------CCC-GGAUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 142122 0.68 0.46037
Target:  5'- gCUCCUCCG-UCCUCuggacuagGGGcCCUGGGCCc -3'
miRNA:   3'- -GGGGAGGUgAGGGG--------CCC-GGAUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 73035 0.68 0.46037
Target:  5'- gCCCUcguUCCACggCCCgGGGUCggcGGCCc -3'
miRNA:   3'- -GGGG---AGGUGa-GGGgCCCGGau-CCGGc -5'
28752 5' -64.9 NC_006146.1 + 13979 0.67 0.477725
Target:  5'- gCCCgucagcgCCGC-CaCCCaGGCCUcGGCCGg -3'
miRNA:   3'- gGGGa------GGUGaG-GGGcCCGGAuCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 33193 0.67 0.486523
Target:  5'- gCCCgggCAC-CCCCGGGgggAGGCCGg -3'
miRNA:   3'- gGGGag-GUGaGGGGCCCggaUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 101280 0.67 0.51336
Target:  5'- gCCC-CCAgUaCCCCGGGgaCgUGGGCCu -3'
miRNA:   3'- gGGGaGGUgA-GGGGCCC--GgAUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 18843 0.67 0.51336
Target:  5'- -gCUUCCAgaCCCCGGGCgCU--GCCGg -3'
miRNA:   3'- ggGGAGGUgaGGGGCCCG-GAucCGGC- -5'
28752 5' -64.9 NC_006146.1 + 136748 0.67 0.504344
Target:  5'- aCCCC-CCACccUCgCCGGGgCUccgggAGGCCc -3'
miRNA:   3'- -GGGGaGGUG--AGgGGCCCgGA-----UCCGGc -5'
28752 5' -64.9 NC_006146.1 + 129554 0.67 0.504344
Target:  5'- aCCaCCgCCAggCCCUGGGCCagaUAGGuuGg -3'
miRNA:   3'- -GG-GGaGGUgaGGGGCCCGG---AUCCggC- -5'
28752 5' -64.9 NC_006146.1 + 118551 0.67 0.498967
Target:  5'- aCCC-CCACUgccaaaaggacgccgCCCCGGGCaccccGGCCc -3'
miRNA:   3'- gGGGaGGUGA---------------GGGGCCCGgau--CCGGc -5'
28752 5' -64.9 NC_006146.1 + 33026 0.67 0.495397
Target:  5'- cCCCCUgCCGg-CCCgGGGCg-GGGCCc -3'
miRNA:   3'- -GGGGA-GGUgaGGGgCCCGgaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 168131 0.67 0.486523
Target:  5'- gUCUUCC-CUgacaUCCGGGCUUGGGCCu -3'
miRNA:   3'- gGGGAGGuGAg---GGGCCCGGAUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 103671 0.67 0.486523
Target:  5'- -gCCUCCgugGCUUCCUGuGCCU-GGCCGg -3'
miRNA:   3'- ggGGAGG---UGAGGGGCcCGGAuCCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.