miRNA display CGI


Results 81 - 100 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28752 5' -64.9 NC_006146.1 + 117100 0.68 0.450967
Target:  5'- gCCCC-CCGCUauggacgCCgCgCGGGCCgAGGCCc -3'
miRNA:   3'- -GGGGaGGUGA-------GG-G-GCCCGGaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 54786 0.68 0.449269
Target:  5'- cCCCUUCCACUuguuuuacggggacCCUCGGGU---GGCCGc -3'
miRNA:   3'- -GGGGAGGUGA--------------GGGGCCCGgauCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 116182 0.68 0.443354
Target:  5'- uCCCCUCgGCcgcccugaCCCGGGCCc--GCCGu -3'
miRNA:   3'- -GGGGAGgUGag------GGGCCCGGaucCGGC- -5'
28752 5' -64.9 NC_006146.1 + 43163 0.68 0.443354
Target:  5'- uCUUCUCCagGCUCUCCGGGCCca-GCCc -3'
miRNA:   3'- -GGGGAGG--UGAGGGGCCCGGaucCGGc -5'
28752 5' -64.9 NC_006146.1 + 102020 0.68 0.43498
Target:  5'- cCUUCUCCAuCUCCaucaGGGCC-AGGCUGu -3'
miRNA:   3'- -GGGGAGGU-GAGGgg--CCCGGaUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 56666 0.68 0.426698
Target:  5'- gCCCUCC-CUgaggUgCCGGGCCcccugGGGCUGg -3'
miRNA:   3'- gGGGAGGuGA----GgGGCCCGGa----UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 71904 0.68 0.426698
Target:  5'- aCCCUCCugcgcgcggcCUCugaCCUGGGCCUgaccuGGGCCu -3'
miRNA:   3'- gGGGAGGu---------GAG---GGGCCCGGA-----UCCGGc -5'
28752 5' -64.9 NC_006146.1 + 73035 0.68 0.46037
Target:  5'- gCCCUcguUCCACggCCCgGGGUCggcGGCCc -3'
miRNA:   3'- -GGGG---AGGUGa-GGGgCCCGGau-CCGGc -5'
28752 5' -64.9 NC_006146.1 + 142122 0.68 0.46037
Target:  5'- gCUCCUCCG-UCCUCuggacuagGGGcCCUGGGCCc -3'
miRNA:   3'- -GGGGAGGUgAGGGG--------CCC-GGAUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 145200 0.68 0.46037
Target:  5'- gCUCCUCCG-UCCUCuggacuagGGGcCCUGGGCCc -3'
miRNA:   3'- -GGGGAGGUgAGGGG--------CCC-GGAUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 168131 0.67 0.486523
Target:  5'- gUCUUCC-CUgacaUCCGGGCUUGGGCCu -3'
miRNA:   3'- gGGGAGGuGAg---GGGCCCGGAUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 103671 0.67 0.486523
Target:  5'- -gCCUCCgugGCUUCCUGuGCCU-GGCCGg -3'
miRNA:   3'- ggGGAGG---UGAGGGGCcCGGAuCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 33193 0.67 0.486523
Target:  5'- gCCCgggCAC-CCCCGGGgggAGGCCGg -3'
miRNA:   3'- gGGGag-GUGaGGGGCCCggaUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 13979 0.67 0.477725
Target:  5'- gCCCgucagcgCCGC-CaCCCaGGCCUcGGCCGg -3'
miRNA:   3'- gGGGa------GGUGaG-GGGcCCGGAuCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 23933 0.67 0.47685
Target:  5'- gCCCCUCCugccccaagggcgGCgacuuuccCCCCGGGUCgggugggGGaGCCGg -3'
miRNA:   3'- -GGGGAGG-------------UGa-------GGGGCCCGGa------UC-CGGC- -5'
28752 5' -64.9 NC_006146.1 + 157512 0.68 0.46037
Target:  5'- gCUCCUCCG-UCCUCuggacuagGGGcCCUGGGCCc -3'
miRNA:   3'- -GGGGAGGUgAGGGG--------CCC-GGAUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 154434 0.68 0.46037
Target:  5'- gCUCCUCCG-UCCUCuggacuagGGGcCCUGGGCCc -3'
miRNA:   3'- -GGGGAGGUgAGGGG--------CCC-GGAUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 151356 0.68 0.46037
Target:  5'- gCUCCUCCG-UCCUCuggacuagGGGcCCUGGGCCc -3'
miRNA:   3'- -GGGGAGGUgAGGGG--------CCC-GGAUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 148278 0.68 0.46037
Target:  5'- gCUCCUCCG-UCCUCuggacuagGGGcCCUGGGCCc -3'
miRNA:   3'- -GGGGAGGUgAGGGG--------CCC-GGAUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 109948 0.69 0.402426
Target:  5'- aCCCC-CCAC-CCCCGGGCCUc----- -3'
miRNA:   3'- -GGGGaGGUGaGGGGCCCGGAuccggc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.