miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28753 3' -56.9 NC_006146.1 + 144423 1.1 0.001887
Target:  5'- gAGGGCACCUACUCGAGGCAGGCUUACa -3'
miRNA:   3'- -UCCCGUGGAUGAGCUCCGUCCGAAUG- -5'
28753 3' -56.9 NC_006146.1 + 153657 1.1 0.001887
Target:  5'- gAGGGCACCUACUCGAGGCAGGCUUACa -3'
miRNA:   3'- -UCCCGUGGAUGAGCUCCGUCCGAAUG- -5'
28753 3' -56.9 NC_006146.1 + 156734 1.1 0.001887
Target:  5'- gAGGGCACCUACUCGAGGCAGGCUUACa -3'
miRNA:   3'- -UCCCGUGGAUGAGCUCCGUCCGAAUG- -5'
28753 3' -56.9 NC_006146.1 + 141345 1.1 0.001887
Target:  5'- gAGGGCACCUACUCGAGGCAGGCUUACa -3'
miRNA:   3'- -UCCCGUGGAUGAGCUCCGUCCGAAUG- -5'
28753 3' -56.9 NC_006146.1 + 147501 1.1 0.001887
Target:  5'- gAGGGCACCUACUCGAGGCAGGCUUACa -3'
miRNA:   3'- -UCCCGUGGAUGAGCUCCGUCCGAAUG- -5'
28753 3' -56.9 NC_006146.1 + 150579 1.1 0.001887
Target:  5'- gAGGGCACCUACUCGAGGCAGGCUUACa -3'
miRNA:   3'- -UCCCGUGGAUGAGCUCCGUCCGAAUG- -5'
28753 3' -56.9 NC_006146.1 + 92161 0.76 0.34158
Target:  5'- uGGGGCugCUGCUgGGGGgCGGGCccgGCc -3'
miRNA:   3'- -UCCCGugGAUGAgCUCC-GUCCGaa-UG- -5'
28753 3' -56.9 NC_006146.1 + 92042 0.76 0.34158
Target:  5'- uGGGGCugCUGCUgGGGGgCGGGCccgGCc -3'
miRNA:   3'- -UCCCGugGAUGAgCUCC-GUCCGaa-UG- -5'
28753 3' -56.9 NC_006146.1 + 92131 0.76 0.34158
Target:  5'- uGGGGCugCUGCUgGGGGgCGGGCccgGCc -3'
miRNA:   3'- -UCCCGugGAUGAgCUCC-GUCCGaa-UG- -5'
28753 3' -56.9 NC_006146.1 + 92012 0.76 0.34158
Target:  5'- uGGGGCugCUGCUgGGGGgCGGGCccgGCc -3'
miRNA:   3'- -UCCCGugGAUGAgCUCC-GUCCGaa-UG- -5'
28753 3' -56.9 NC_006146.1 + 92191 0.76 0.34158
Target:  5'- uGGGGCugCUGCUgGGGGgCGGGCccgGCc -3'
miRNA:   3'- -UCCCGugGAUGAgCUCC-GUCCGaa-UG- -5'
28753 3' -56.9 NC_006146.1 + 92281 0.76 0.34158
Target:  5'- uGGGGCugCUGCUgGGGGgCGGGCccgGCc -3'
miRNA:   3'- -UCCCGugGAUGAgCUCC-GUCCGaa-UG- -5'
28753 3' -56.9 NC_006146.1 + 92221 0.76 0.34158
Target:  5'- uGGGGCugCUGCUgGGGGgCGGGCccgGCc -3'
miRNA:   3'- -UCCCGugGAUGAgCUCC-GUCCGaa-UG- -5'
28753 3' -56.9 NC_006146.1 + 92101 0.76 0.34158
Target:  5'- uGGGGCugCUGCUgGGGGgCGGGCccgGCc -3'
miRNA:   3'- -UCCCGugGAUGAgCUCC-GUCCGaa-UG- -5'
28753 3' -56.9 NC_006146.1 + 92311 0.76 0.34158
Target:  5'- uGGGGCugCUGCUgGGGGgCGGGCccgGCc -3'
miRNA:   3'- -UCCCGugGAUGAgCUCC-GUCCGaa-UG- -5'
28753 3' -56.9 NC_006146.1 + 33998 0.75 0.393098
Target:  5'- cGGuGCACCUggaaggcagggggggGgUCGGGGCAGGCggGCg -3'
miRNA:   3'- uCC-CGUGGA---------------UgAGCUCCGUCCGaaUG- -5'
28753 3' -56.9 NC_006146.1 + 137828 0.74 0.441214
Target:  5'- cGGuGCACCUggaaggcagggggGCUCGGGGUGGGUggGCg -3'
miRNA:   3'- uCC-CGUGGA-------------UGAGCUCCGUCCGaaUG- -5'
28753 3' -56.9 NC_006146.1 + 11848 0.73 0.507931
Target:  5'- cGGGC-CCUgcuucucggGCUUGGGGCGGGCccgACg -3'
miRNA:   3'- uCCCGuGGA---------UGAGCUCCGUCCGaa-UG- -5'
28753 3' -56.9 NC_006146.1 + 84945 0.72 0.567429
Target:  5'- cGGaGGCGCCUcGCUUGGGGgGGGCa--- -3'
miRNA:   3'- -UC-CCGUGGA-UGAGCUCCgUCCGaaug -5'
28753 3' -56.9 NC_006146.1 + 15931 0.72 0.537396
Target:  5'- aGGaGGCGCCUGggCGAGGCuggguGGCUggGCa -3'
miRNA:   3'- -UC-CCGUGGAUgaGCUCCGu----CCGAa-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.