miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28753 3' -56.9 NC_006146.1 + 167309 0.66 0.847147
Target:  5'- -cGGCGCCUGCagggGGGGCcGGCgggGCg -3'
miRNA:   3'- ucCCGUGGAUGag--CUCCGuCCGaa-UG- -5'
28753 3' -56.9 NC_006146.1 + 48625 0.68 0.768254
Target:  5'- cGGGUGCCg--UgGGGGCGGGCUccggGCg -3'
miRNA:   3'- uCCCGUGGaugAgCUCCGUCCGAa---UG- -5'
28753 3' -56.9 NC_006146.1 + 22439 0.7 0.638774
Target:  5'- cGGGCGCCUcCUCGGguucagccgcuGGCuGGCUcUGCc -3'
miRNA:   3'- uCCCGUGGAuGAGCU-----------CCGuCCGA-AUG- -5'
28753 3' -56.9 NC_006146.1 + 78950 0.66 0.862727
Target:  5'- -aGGCuCCUAaaaGGGGCAGGCcUGCc -3'
miRNA:   3'- ucCCGuGGAUgagCUCCGUCCGaAUG- -5'
28753 3' -56.9 NC_006146.1 + 68157 0.71 0.618301
Target:  5'- aGGGGCuGCCUcCUCcccGGGCAGGCgcaGCg -3'
miRNA:   3'- -UCCCG-UGGAuGAGc--UCCGUCCGaa-UG- -5'
28753 3' -56.9 NC_006146.1 + 42831 0.67 0.830785
Target:  5'- --cGCACCUGCaUGAGGCcgguGGuCUUGCg -3'
miRNA:   3'- uccCGUGGAUGaGCUCCGu---CC-GAAUG- -5'
28753 3' -56.9 NC_006146.1 + 151710 0.68 0.786859
Target:  5'- gAGGcGCGCCUGCguaGAaGUAGGCcUGCu -3'
miRNA:   3'- -UCC-CGUGGAUGag-CUcCGUCCGaAUG- -5'
28753 3' -56.9 NC_006146.1 + 28242 0.72 0.537396
Target:  5'- aGGaGGCGCCUGggCGAGGCuggguGGCUggGCa -3'
miRNA:   3'- -UC-CCGUGGAUgaGCUCCGu----CCGAa-UG- -5'
28753 3' -56.9 NC_006146.1 + 168241 0.66 0.847147
Target:  5'- -cGGCGCCUGCagggGGGGCcGGCgggGCg -3'
miRNA:   3'- ucCCGUGGAUGag--CUCCGuCCGaa-UG- -5'
28753 3' -56.9 NC_006146.1 + 58107 0.66 0.847147
Target:  5'- uGGGGCGCa-ACggGAGGCAGGagaGCg -3'
miRNA:   3'- -UCCCGUGgaUGagCUCCGUCCgaaUG- -5'
28753 3' -56.9 NC_006146.1 + 12852 0.7 0.659226
Target:  5'- aGGaGGCGCCUGgggCGAGGCuggguGGCUggGCa -3'
miRNA:   3'- -UC-CCGUGGAUga-GCUCCGu----CCGAa-UG- -5'
28753 3' -56.9 NC_006146.1 + 25517 0.7 0.638774
Target:  5'- cGGGCGCCUcCUCGGguucagccgcuGGCuGGCUcUGCc -3'
miRNA:   3'- uCCCGUGGAuGAGCU-----------CCGuCCGA-AUG- -5'
28753 3' -56.9 NC_006146.1 + 22086 0.72 0.537396
Target:  5'- aGGaGGCGCCUGggCGAGGCuggguGGCUggGCa -3'
miRNA:   3'- -UC-CCGUGGAUgaGCUCCGu----CCGAa-UG- -5'
28753 3' -56.9 NC_006146.1 + 50178 0.67 0.830785
Target:  5'- gGGGGCGuuUgcACUUGcGGCGGGCUc-- -3'
miRNA:   3'- -UCCCGUggA--UGAGCuCCGUCCGAaug -5'
28753 3' -56.9 NC_006146.1 + 15046 0.66 0.854258
Target:  5'- cAGGGCccgccggGCCUGCgagGAGGCAcuGGCggggGCu -3'
miRNA:   3'- -UCCCG-------UGGAUGag-CUCCGU--CCGaa--UG- -5'
28753 3' -56.9 NC_006146.1 + 77894 0.66 0.855038
Target:  5'- cGGaGCACgCUGCUUaacaggcgcaGGGGCGGGCg--- -3'
miRNA:   3'- uCC-CGUG-GAUGAG----------CUCCGUCCGaaug -5'
28753 3' -56.9 NC_006146.1 + 85306 0.69 0.739459
Target:  5'- -cGGUGCCaGCUucCGAGGCGGGCggcUGCc -3'
miRNA:   3'- ucCCGUGGaUGA--GCUCCGUCCGa--AUG- -5'
28753 3' -56.9 NC_006146.1 + 95537 0.69 0.739459
Target:  5'- uGGGGC-CCaGCUUGGGGCAGcGUaugACa -3'
miRNA:   3'- -UCCCGuGGaUGAGCUCCGUC-CGaa-UG- -5'
28753 3' -56.9 NC_006146.1 + 20963 0.68 0.749163
Target:  5'- uGGGCGCCccucaACccCGAgGGCAGGC-UACg -3'
miRNA:   3'- uCCCGUGGa----UGa-GCU-CCGUCCGaAUG- -5'
28753 3' -56.9 NC_006146.1 + 86509 0.68 0.768254
Target:  5'- aGGGGCAgCUggGCUUGAGGggcaacUGGGCUUGa -3'
miRNA:   3'- -UCCCGUgGA--UGAGCUCC------GUCCGAAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.