Results 41 - 60 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28754 | 3' | -57.5 | NC_006146.1 | + | 116659 | 0.67 | 0.809563 |
Target: 5'- gCCUGa--CCGGGGCCGCCcagagGCu -3' miRNA: 3'- aGGACccaGGUCCCGGCGGuaauaCG- -5' |
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28754 | 3' | -57.5 | NC_006146.1 | + | 42839 | 0.67 | 0.80082 |
Target: 5'- aUCaGGGccUCgAGGGCCGCCAg---GCc -3' miRNA: 3'- aGGaCCC--AGgUCCCGGCGGUaauaCG- -5' |
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28754 | 3' | -57.5 | NC_006146.1 | + | 76256 | 0.67 | 0.80082 |
Target: 5'- uUCgUGGuccCCAGGGCgGCCAUcAUGg -3' miRNA: 3'- -AGgACCca-GGUCCCGgCGGUAaUACg -5' |
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28754 | 3' | -57.5 | NC_006146.1 | + | 137309 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28754 | 3' | -57.5 | NC_006146.1 | + | 135358 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28754 | 3' | -57.5 | NC_006146.1 | + | 136659 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28754 | 3' | -57.5 | NC_006146.1 | + | 135451 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28754 | 3' | -57.5 | NC_006146.1 | + | 135822 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28754 | 3' | -57.5 | NC_006146.1 | + | 135915 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28754 | 3' | -57.5 | NC_006146.1 | + | 137216 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28754 | 3' | -57.5 | NC_006146.1 | + | 136751 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28754 | 3' | -57.5 | NC_006146.1 | + | 137123 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28754 | 3' | -57.5 | NC_006146.1 | + | 135729 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28754 | 3' | -57.5 | NC_006146.1 | + | 107623 | 0.68 | 0.764449 |
Target: 5'- aCCgGaGGUgCCAGGGCUGUCAUc-UGCc -3' miRNA: 3'- aGGaC-CCA-GGUCCCGGCGGUAauACG- -5' |
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28754 | 3' | -57.5 | NC_006146.1 | + | 124288 | 0.68 | 0.768178 |
Target: 5'- gCC-GGGacaucaacaggcucuUCCAGGGCCagGCCAaugGUGCu -3' miRNA: 3'- aGGaCCC---------------AGGUCCCGG--CGGUaa-UACG- -5' |
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28754 | 3' | -57.5 | NC_006146.1 | + | 55044 | 0.68 | 0.773735 |
Target: 5'- gUCgGGG-CCGGGGCCuGCCAcag-GCg -3' miRNA: 3'- aGGaCCCaGGUCCCGG-CGGUaauaCG- -5' |
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28754 | 3' | -57.5 | NC_006146.1 | + | 135265 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28754 | 3' | -57.5 | NC_006146.1 | + | 136937 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28754 | 3' | -57.5 | NC_006146.1 | + | 136844 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28754 | 3' | -57.5 | NC_006146.1 | + | 137030 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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