Results 1 - 20 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28754 | 5' | -53.6 | NC_006146.1 | + | 92444 | 0.69 | 0.880392 |
Target: 5'- gAGACuguAGcGGCGCCgGGAUgGCCa- -3' miRNA: 3'- -UCUGuu-UUaCCGCGGgUCUAgCGGag -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 133833 | 0.77 | 0.475239 |
Target: 5'- gGGugAGGAUGGUggGCCCAGAcgcaGCCUCu -3' miRNA: 3'- -UCugUUUUACCG--CGGGUCUag--CGGAG- -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 112114 | 0.74 | 0.606434 |
Target: 5'- gGGugGAGGUGGUGCUgGuGGUgGCCUCg -3' miRNA: 3'- -UCugUUUUACCGCGGgU-CUAgCGGAG- -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 129117 | 0.7 | 0.824648 |
Target: 5'- aGGGCcugaGAGcgGGCGCCCGGGcgcaggGCCUCc -3' miRNA: 3'- -UCUG----UUUuaCCGCGGGUCUag----CGGAG- -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 167512 | 0.7 | 0.824648 |
Target: 5'- gGGGCAGGGcUGGCGCCgGGccgCGCCc- -3' miRNA: 3'- -UCUGUUUU-ACCGCGGgUCua-GCGGag -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 4790 | 0.74 | 0.637732 |
Target: 5'- cAGuACGAGuuucuGCGCCCGGggCGCCUCa -3' miRNA: 3'- -UC-UGUUUuac--CGCGGGUCuaGCGGAG- -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 68739 | 0.71 | 0.797877 |
Target: 5'- -cGCGGGGUGGUggagGCCCAGGUgGCCa- -3' miRNA: 3'- ucUGUUUUACCG----CGGGUCUAgCGGag -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 112216 | 0.7 | 0.824648 |
Target: 5'- uGGACAGGGUGGCgGCCUGGGUgGUUg- -3' miRNA: 3'- -UCUGUUUUACCG-CGGGUCUAgCGGag -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 49547 | 0.69 | 0.857759 |
Target: 5'- gGGGCGGAGgccacgccGGCcagGCCCAGcAUgGCCUCg -3' miRNA: 3'- -UCUGUUUUa-------CCG---CGGGUC-UAgCGGAG- -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 113668 | 0.68 | 0.900961 |
Target: 5'- cGACGAGagGUGGCucggGCCCGGGcccgGCCUCc -3' miRNA: 3'- uCUGUUU--UACCG----CGGGUCUag--CGGAG- -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 128180 | 0.66 | 0.970962 |
Target: 5'- cGACGccGGGaGGCgGCCCAGGggggCGCCg- -3' miRNA: 3'- uCUGU--UUUaCCG-CGGGUCUa---GCGGag -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 135 | 0.73 | 0.689684 |
Target: 5'- aGGACu--AUGGCGCCUGGAUgGCUg- -3' miRNA: 3'- -UCUGuuuUACCGCGGGUCUAgCGGag -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 126941 | 0.73 | 0.658588 |
Target: 5'- uGGCAGGAUGGCGCucuCCGGG-CGCgUCu -3' miRNA: 3'- uCUGUUUUACCGCG---GGUCUaGCGgAG- -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 169376 | 0.7 | 0.824648 |
Target: 5'- gGGGCAGGGcUGGCGCCgGGccgCGCCc- -3' miRNA: 3'- -UCUGUUUU-ACCGCGGgUCua-GCGGag -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 170307 | 0.7 | 0.824648 |
Target: 5'- gGGGCAGGGcUGGCGCCgGGccgCGCCc- -3' miRNA: 3'- -UCUGUUUU-ACCGCGGgUCua-GCGGag -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 57996 | 0.72 | 0.720331 |
Target: 5'- aGGACGAGcUGGagGCCCGGGUCucgGCCUUc -3' miRNA: 3'- -UCUGUUUuACCg-CGGGUCUAG---CGGAG- -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 67788 | 0.68 | 0.900961 |
Target: 5'- gGGACGuGAcGGCGgCCAGGcucugcccCGCCUCg -3' miRNA: 3'- -UCUGUuUUaCCGCgGGUCUa-------GCGGAG- -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 130968 | 0.68 | 0.900961 |
Target: 5'- gGGuCAGGA-GGCGCCCAGAUa-CUUCc -3' miRNA: 3'- -UCuGUUUUaCCGCGGGUCUAgcGGAG- -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 86521 | 0.71 | 0.806969 |
Target: 5'- gAGGCcauGAUGGcCGCCCGGuccaCGCCUa -3' miRNA: 3'- -UCUGuu-UUACC-GCGGGUCua--GCGGAg -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 168444 | 0.7 | 0.824648 |
Target: 5'- gGGGCAGGGcUGGCGCCgGGccgCGCCc- -3' miRNA: 3'- -UCUGUUUU-ACCGCGGgUCua-GCGGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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