Results 41 - 60 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28754 | 5' | -53.6 | NC_006146.1 | + | 56583 | 0.66 | 0.96794 |
Target: 5'- gGGGCGGccgGGCGCCgAGccCGCCg- -3' miRNA: 3'- -UCUGUUuuaCCGCGGgUCuaGCGGag -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 96830 | 0.66 | 0.967626 |
Target: 5'- gGGACGGGcgGGCagguuggGCCCGcuUCaGCCUCu -3' miRNA: 3'- -UCUGUUUuaCCG-------CGGGUcuAG-CGGAG- -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 18444 | 0.67 | 0.940416 |
Target: 5'- gGGugGGAucaGGCuaaCCCAaGUCGCCUCa -3' miRNA: 3'- -UCugUUUua-CCGc--GGGUcUAGCGGAG- -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 67788 | 0.68 | 0.900961 |
Target: 5'- gGGACGuGAcGGCGgCCAGGcucugcccCGCCUCg -3' miRNA: 3'- -UCUGUuUUaCCGCgGGUCUa-------GCGGAG- -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 68331 | 0.69 | 0.887484 |
Target: 5'- cGAgAGGAUGGCGUCgAGGaCGgCCUCc -3' miRNA: 3'- uCUgUUUUACCGCGGgUCUaGC-GGAG- -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 47714 | 0.67 | 0.945062 |
Target: 5'- aGGugGGGAgcaGCGCCCGGAgcUCGUCg- -3' miRNA: 3'- -UCugUUUUac-CGCGGGUCU--AGCGGag -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 147179 | 0.67 | 0.949464 |
Target: 5'- -cGCAGAccGGCGCCCcu-UCGCC-Cg -3' miRNA: 3'- ucUGUUUuaCCGCGGGucuAGCGGaG- -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 25584 | 0.67 | 0.949464 |
Target: 5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3' miRNA: 3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 89683 | 0.67 | 0.945062 |
Target: 5'- cGACGGAA-GGgGCCCGGGgaacgGCCUg -3' miRNA: 3'- uCUGUUUUaCCgCGGGUCUag---CGGAg -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 88259 | 0.68 | 0.913471 |
Target: 5'- cAGGCAAAAUccGGCGUgugCUGGGUCggGCCUCu -3' miRNA: 3'- -UCUGUUUUA--CCGCG---GGUCUAG--CGGAG- -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 128180 | 0.66 | 0.970962 |
Target: 5'- cGACGccGGGaGGCgGCCCAGGggggCGCCg- -3' miRNA: 3'- uCUGU--UUUaCCG-CGGGUCUa---GCGGag -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 85918 | 0.66 | 0.96794 |
Target: 5'- gGGGCuuuacccUGGgGCCUGGAUgGCCUg -3' miRNA: 3'- -UCUGuuuu---ACCgCGGGUCUAgCGGAg -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 170638 | 0.66 | 0.9647 |
Target: 5'- cGGGCucccccucacGGGUGGCGCgCAGAUCGgCg- -3' miRNA: 3'- -UCUGu---------UUUACCGCGgGUCUAGCgGag -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 160179 | 0.66 | 0.9647 |
Target: 5'- uGGCuc--UGGCuGCCCAGAuuauccUCGCCa- -3' miRNA: 3'- uCUGuuuuACCG-CGGGUCU------AGCGGag -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 146719 | 0.66 | 0.957548 |
Target: 5'- cGGugGAGGUGGC-CCCGGG-CGCa-- -3' miRNA: 3'- -UCugUUUUACCGcGGGUCUaGCGgag -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 149797 | 0.66 | 0.957548 |
Target: 5'- cGGugGAGGUGGC-CCCGGG-CGCa-- -3' miRNA: 3'- -UCugUUUUACCGcGGGUCUaGCGgag -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 20279 | 0.68 | 0.90031 |
Target: 5'- cGugGAGGUGGCcgagaucGCCaAGAUCGCC-Ca -3' miRNA: 3'- uCugUUUUACCG-------CGGgUCUAGCGGaG- -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 158136 | 0.69 | 0.894342 |
Target: 5'- gGGACcuGGUGGCGCCCGc--CGgCUCc -3' miRNA: 3'- -UCUGuuUUACCGCGGGUcuaGCgGAG- -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 43372 | 0.66 | 0.967939 |
Target: 5'- gAGACGGAGuUGGUgaaGUUCAGGUUGCCccUCa -3' miRNA: 3'- -UCUGUUUU-ACCG---CGGGUCUAGCGG--AG- -5' |
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28754 | 5' | -53.6 | NC_006146.1 | + | 155057 | 0.69 | 0.894342 |
Target: 5'- gGGACcuGGUGGCGCCCGc--CGgCUCc -3' miRNA: 3'- -UCUGuuUUACCGCGGGUcuaGCgGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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