miRNA display CGI


Results 1 - 20 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28755 5' -64.9 NC_006146.1 + 117527 0.75 0.17969
Target:  5'- gUCUCacgCCuCUCCCUcgGGGCCUGGGCCGc -3'
miRNA:   3'- -GGGGa--GGuGAGGGG--CCCGGAUCCGGC- -5'
28755 5' -64.9 NC_006146.1 + 12342 0.77 0.122822
Target:  5'- uCCCCU-CGC-CCCUGGGCCUcAGGCCc -3'
miRNA:   3'- -GGGGAgGUGaGGGGCCCGGA-UCCGGc -5'
28755 5' -64.9 NC_006146.1 + 15421 0.77 0.122822
Target:  5'- uCCCCU-CGC-CCCUGGGCCUcAGGCCc -3'
miRNA:   3'- -GGGGAgGUGaGGGGCCCGGA-UCCGGc -5'
28755 5' -64.9 NC_006146.1 + 13930 0.75 0.167491
Target:  5'- cCCCCUCCucucuccCUCCCCGaGGCCccGGCUc -3'
miRNA:   3'- -GGGGAGGu------GAGGGGC-CCGGauCCGGc -5'
28755 5' -64.9 NC_006146.1 + 17007 0.75 0.167491
Target:  5'- cCCCCUCCucucuccCUCCCCGaGGCCccGGCUc -3'
miRNA:   3'- -GGGGAGGu------GAGGGGC-CCGGauCCGGc -5'
28755 5' -64.9 NC_006146.1 + 18499 0.77 0.122822
Target:  5'- uCCCCU-CGC-CCCUGGGCCUcAGGCCc -3'
miRNA:   3'- -GGGGAgGUGaGGGGCCCGGA-UCCGGc -5'
28755 5' -64.9 NC_006146.1 + 110437 0.77 0.128892
Target:  5'- gCCUCUcaCCGCUCCCCGcGGCCUGccgcucacucGGCCa -3'
miRNA:   3'- -GGGGA--GGUGAGGGGC-CCGGAU----------CCGGc -5'
28755 5' -64.9 NC_006146.1 + 54630 0.75 0.167491
Target:  5'- gCCUCUCUgguccggugGCUCCCCGGGCauuggagGGGCCc -3'
miRNA:   3'- -GGGGAGG---------UGAGGGGCCCGga-----UCCGGc -5'
28755 5' -64.9 NC_006146.1 + 29319 0.75 0.167491
Target:  5'- cCCCCUCCucucuccCUCCCCGaGGCCccGGCUc -3'
miRNA:   3'- -GGGGAGGu------GAGGGGC-CCGGauCCGGc -5'
28755 5' -64.9 NC_006146.1 + 53003 0.74 0.197179
Target:  5'- gCCCCUCUucuggCCCUGGGCCUcacgcggcuGGCCGc -3'
miRNA:   3'- -GGGGAGGuga--GGGGCCCGGAu--------CCGGC- -5'
28755 5' -64.9 NC_006146.1 + 41322 0.66 0.590311
Target:  5'- gUCCCUCCcuguuucGCgCCCCaaccuaucuggcccaGGGCCUGgcggugguGGCCGu -3'
miRNA:   3'- -GGGGAGG-------UGaGGGG---------------CCCGGAU--------CCGGC- -5'
28755 5' -64.9 NC_006146.1 + 24655 0.77 0.122822
Target:  5'- uCCCCU-CGC-CCCUGGGCCUcAGGCCc -3'
miRNA:   3'- -GGGGAgGUGaGGGGCCCGGA-UCCGGc -5'
28755 5' -64.9 NC_006146.1 + 21577 0.77 0.122822
Target:  5'- uCCCCU-CGC-CCCUGGGCCUcAGGCCc -3'
miRNA:   3'- -GGGGAgGUGaGGGGCCCGGA-UCCGGc -5'
28755 5' -64.9 NC_006146.1 + 23163 0.75 0.167491
Target:  5'- cCCCCUCCucucuccCUCCCCGaGGCCccGGCUc -3'
miRNA:   3'- -GGGGAGGu------GAGGGGC-CCGGauCCGGc -5'
28755 5' -64.9 NC_006146.1 + 26241 0.75 0.167491
Target:  5'- cCCCCUCCucucuccCUCCCCGaGGCCccGGCUc -3'
miRNA:   3'- -GGGGAGGu------GAGGGGC-CCGGauCCGGc -5'
28755 5' -64.9 NC_006146.1 + 27733 0.77 0.122822
Target:  5'- uCCCCU-CGC-CCCUGGGCCUcAGGCCc -3'
miRNA:   3'- -GGGGAgGUGaGGGGCCCGGA-UCCGGc -5'
28755 5' -64.9 NC_006146.1 + 129841 0.74 0.183929
Target:  5'- cUCCCUCCA--CCCCGaGGCCcccaGGGCCGc -3'
miRNA:   3'- -GGGGAGGUgaGGGGC-CCGGa---UCCGGC- -5'
28755 5' -64.9 NC_006146.1 + 55881 0.74 0.199007
Target:  5'- cCCCCUCCccuGCUCCCCGcuccaccagcuccacGGCCauGGCCu -3'
miRNA:   3'- -GGGGAGG---UGAGGGGC---------------CCGGauCCGGc -5'
28755 5' -64.9 NC_006146.1 + 137702 0.76 0.152381
Target:  5'- cCCCCUCCGgcCUCCCCccggGGuGCCcGGGCCu -3'
miRNA:   3'- -GGGGAGGU--GAGGGG----CC-CGGaUCCGGc -5'
28755 5' -64.9 NC_006146.1 + 20085 0.75 0.167491
Target:  5'- cCCCCUCCucucuccCUCCCCGaGGCCccGGCUc -3'
miRNA:   3'- -GGGGAGGu------GAGGGGC-CCGGauCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.