Results 41 - 60 of 314 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28755 | 5' | -64.9 | NC_006146.1 | + | 56058 | 0.66 | 0.550036 |
Target: 5'- gCCCCUCCcgcgggaagGCgucCCaCCGGGCCaagUAGGUg- -3' miRNA: 3'- -GGGGAGG---------UGa--GG-GGCCCGG---AUCCGgc -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 56564 | 0.66 | 0.550036 |
Target: 5'- cCCCCgUCCAC-CUCCGucaggggcGGCCgGGcGCCGa -3' miRNA: 3'- -GGGG-AGGUGaGGGGC--------CCGGaUC-CGGC- -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 38352 | 0.66 | 0.550036 |
Target: 5'- -aUCUCaCGCUCcgaCCCGaGGCCUucgAGGCCa -3' miRNA: 3'- ggGGAG-GUGAG---GGGC-CCGGA---UCCGGc -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 31442 | 0.66 | 0.550036 |
Target: 5'- cCUUCUCCAgUgcaggcacccCCCCGGGCaccguggGGGCCu -3' miRNA: 3'- -GGGGAGGUgA----------GGGGCCCGga-----UCCGGc -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 9151 | 0.66 | 0.549109 |
Target: 5'- cCCCCUcggaccucagccgCCAC-CCCCGGGCUacaaGGGUUc -3' miRNA: 3'- -GGGGA-------------GGUGaGGGGCCCGGa---UCCGGc -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 149269 | 0.66 | 0.549109 |
Target: 5'- -gCCgugCCGCUCCgcguaggCCGGGuCCUcGGCCa -3' miRNA: 3'- ggGGa--GGUGAGG-------GGCCC-GGAuCCGGc -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 68909 | 0.66 | 0.549109 |
Target: 5'- gCCaCCg-CGCUCaaaauggacgagaCCgGGGCCUGGGCCc -3' miRNA: 3'- -GG-GGagGUGAG-------------GGgCCCGGAUCCGGc -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 71514 | 0.66 | 0.547255 |
Target: 5'- cCCCCUggCCgACUCgcuCCUGGGCCUcaacgcgcggcccgGGcGCCGa -3' miRNA: 3'- -GGGGA--GG-UGAG---GGGCCCGGA--------------UC-CGGC- -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 59245 | 0.66 | 0.540784 |
Target: 5'- -gCCUCCAUgggCCUggguguucaGGGCCU-GGCCGa -3' miRNA: 3'- ggGGAGGUGa--GGGg--------CCCGGAuCCGGC- -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 133338 | 0.66 | 0.540784 |
Target: 5'- aCCCCUagCCAacaaguCUCUCCGGGUCUGcuuGCCu -3' miRNA: 3'- -GGGGA--GGU------GAGGGGCCCGGAUc--CGGc -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 19939 | 0.66 | 0.540784 |
Target: 5'- aUCaaUCCGgcCUCCCUGGGCagaucaGGGCCGg -3' miRNA: 3'- -GGggAGGU--GAGGGGCCCGga----UCCGGC- -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 823 | 0.66 | 0.538018 |
Target: 5'- gCCCCUCCcgccggccauccccACgcgcggCCCCGGGCCcuccCCGa -3' miRNA: 3'- -GGGGAGG--------------UGa-----GGGGCCCGGauccGGC- -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 1755 | 0.66 | 0.538018 |
Target: 5'- gCCCCUCCcgccggccauccccACgcgcggCCCCGGGCCcuccCCGa -3' miRNA: 3'- -GGGGAGG--------------UGa-----GGGGCCCGGauccGGC- -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 2687 | 0.66 | 0.538018 |
Target: 5'- gCCCCUCCcgccggccauccccACgcgcggCCCCGGGCCcuccCCGa -3' miRNA: 3'- -GGGGAGG--------------UGa-----GGGGCCCGGauccGGC- -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 3619 | 0.66 | 0.538018 |
Target: 5'- gCCCCUCCcgccggccauccccACgcgcggCCCCGGGCCcuccCCGa -3' miRNA: 3'- -GGGGAGG--------------UGa-----GGGGCCCGGauccGGC- -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 69219 | 0.67 | 0.535257 |
Target: 5'- cCCCCUCUagcGCcgcccguagcccguuUCCCCccaGGGCC-AGGuCCGg -3' miRNA: 3'- -GGGGAGG---UG---------------AGGGG---CCCGGaUCC-GGC- -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 42954 | 0.67 | 0.531584 |
Target: 5'- gCCCUCCg--CCCCGGGCac--GCUGa -3' miRNA: 3'- gGGGAGGugaGGGGCCCGgaucCGGC- -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 42723 | 0.67 | 0.531584 |
Target: 5'- cCCCCUgggCCGCcUCCCGGcgucgcugcaucGCCUgcggcagcaGGGCCGa -3' miRNA: 3'- -GGGGA---GGUGaGGGGCC------------CGGA---------UCCGGC- -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 115101 | 0.67 | 0.522441 |
Target: 5'- cCUCUUCCACcgCCCCGaGUCgcuGGCCa -3' miRNA: 3'- -GGGGAGGUGa-GGGGCcCGGau-CCGGc -5' |
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28755 | 5' | -64.9 | NC_006146.1 | + | 163784 | 0.67 | 0.522441 |
Target: 5'- aUCCUCUaguuaguauGCagCCUGGGCCUuggcGGGCCa -3' miRNA: 3'- gGGGAGG---------UGagGGGCCCGGA----UCCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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