Results 61 - 80 of 85 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28756 | 3' | -56.9 | NC_006146.1 | + | 42831 | 0.67 | 0.830785 |
Target: 5'- --cGCACCUGCaUGAGGCcgguGGuCUUGCg -3' miRNA: 3'- uccCGUGGAUGaGCUCCGu---CC-GAAUG- -5' |
|||||||
28756 | 3' | -56.9 | NC_006146.1 | + | 40741 | 0.69 | 0.729661 |
Target: 5'- cGGGC-CCgUGCUUGGGGCuGGCcacggACg -3' miRNA: 3'- uCCCGuGG-AUGAGCUCCGuCCGaa---UG- -5' |
|||||||
28756 | 3' | -56.9 | NC_006146.1 | + | 40025 | 0.67 | 0.830785 |
Target: 5'- cAGGGgGCCUGCUgGGGGCcguaGCcgACu -3' miRNA: 3'- -UCCCgUGGAUGAgCUCCGuc--CGaaUG- -5' |
|||||||
28756 | 3' | -56.9 | NC_006146.1 | + | 39276 | 0.68 | 0.749163 |
Target: 5'- uGGGCcCCggACUCGAgacGGCAGGUggcaGCa -3' miRNA: 3'- uCCCGuGGa-UGAGCU---CCGUCCGaa--UG- -5' |
|||||||
28756 | 3' | -56.9 | NC_006146.1 | + | 33998 | 0.75 | 0.393098 |
Target: 5'- cGGuGCACCUggaaggcagggggggGgUCGGGGCAGGCggGCg -3' miRNA: 3'- uCC-CGUGGA---------------UgAGCUCCGUCCGaaUG- -5' |
|||||||
28756 | 3' | -56.9 | NC_006146.1 | + | 30367 | 0.66 | 0.847147 |
Target: 5'- uGGGGUGCCguccCUCccaGGGCuAGGUUUGCu -3' miRNA: 3'- -UCCCGUGGau--GAGc--UCCG-UCCGAAUG- -5' |
|||||||
28756 | 3' | -56.9 | NC_006146.1 | + | 28595 | 0.7 | 0.638774 |
Target: 5'- cGGGCGCCUcCUCGGguucagccgcuGGCuGGCUcUGCc -3' miRNA: 3'- uCCCGUGGAuGAGCU-----------CCGuCCGA-AUG- -5' |
|||||||
28756 | 3' | -56.9 | NC_006146.1 | + | 28242 | 0.72 | 0.537396 |
Target: 5'- aGGaGGCGCCUGggCGAGGCuggguGGCUggGCa -3' miRNA: 3'- -UC-CCGUGGAUgaGCUCCGu----CCGAa-UG- -5' |
|||||||
28756 | 3' | -56.9 | NC_006146.1 | + | 25517 | 0.7 | 0.638774 |
Target: 5'- cGGGCGCCUcCUCGGguucagccgcuGGCuGGCUcUGCc -3' miRNA: 3'- uCCCGUGGAuGAGCU-----------CCGuCCGA-AUG- -5' |
|||||||
28756 | 3' | -56.9 | NC_006146.1 | + | 25164 | 0.72 | 0.537396 |
Target: 5'- aGGaGGCGCCUGggCGAGGCuggguGGCUggGCa -3' miRNA: 3'- -UC-CCGUGGAUgaGCUCCGu----CCGAa-UG- -5' |
|||||||
28756 | 3' | -56.9 | NC_006146.1 | + | 22439 | 0.7 | 0.638774 |
Target: 5'- cGGGCGCCUcCUCGGguucagccgcuGGCuGGCUcUGCc -3' miRNA: 3'- uCCCGUGGAuGAGCU-----------CCGuCCGA-AUG- -5' |
|||||||
28756 | 3' | -56.9 | NC_006146.1 | + | 22086 | 0.72 | 0.537396 |
Target: 5'- aGGaGGCGCCUGggCGAGGCuggguGGCUggGCa -3' miRNA: 3'- -UC-CCGUGGAUgaGCUCCGu----CCGAa-UG- -5' |
|||||||
28756 | 3' | -56.9 | NC_006146.1 | + | 20963 | 0.68 | 0.749163 |
Target: 5'- uGGGCGCCccucaACccCGAgGGCAGGC-UACg -3' miRNA: 3'- uCCCGUGGa----UGa-GCU-CCGUCCGaAUG- -5' |
|||||||
28756 | 3' | -56.9 | NC_006146.1 | + | 20127 | 0.69 | 0.699798 |
Target: 5'- -cGGCACCUGCUgGGGGCcaaaaaggAGGacgUGCa -3' miRNA: 3'- ucCCGUGGAUGAgCUCCG--------UCCga-AUG- -5' |
|||||||
28756 | 3' | -56.9 | NC_006146.1 | + | 19763 | 0.66 | 0.881732 |
Target: 5'- uGGGCACCUGCgaagacauagagGGGGUugAGGUcUACg -3' miRNA: 3'- uCCCGUGGAUGag----------CUCCG--UCCGaAUG- -5' |
|||||||
28756 | 3' | -56.9 | NC_006146.1 | + | 19361 | 0.7 | 0.638774 |
Target: 5'- cGGGCGCCUcCUCGGguucagccgcuGGCuGGCUcUGCc -3' miRNA: 3'- uCCCGUGGAuGAGCU-----------CCGuCCGA-AUG- -5' |
|||||||
28756 | 3' | -56.9 | NC_006146.1 | + | 19008 | 0.72 | 0.537396 |
Target: 5'- aGGaGGCGCCUGggCGAGGCuggguGGCUggGCa -3' miRNA: 3'- -UC-CCGUGGAUgaGCUCCGu----CCGAa-UG- -5' |
|||||||
28756 | 3' | -56.9 | NC_006146.1 | + | 16283 | 0.7 | 0.638774 |
Target: 5'- cGGGCGCCUcCUCGGguucagccgcuGGCuGGCUcUGCc -3' miRNA: 3'- uCCCGUGGAuGAGCU-----------CCGuCCGA-AUG- -5' |
|||||||
28756 | 3' | -56.9 | NC_006146.1 | + | 15931 | 0.72 | 0.537396 |
Target: 5'- aGGaGGCGCCUGggCGAGGCuggguGGCUggGCa -3' miRNA: 3'- -UC-CCGUGGAUgaGCUCCGu----CCGAa-UG- -5' |
|||||||
28756 | 3' | -56.9 | NC_006146.1 | + | 15926 | 0.68 | 0.777621 |
Target: 5'- cGGGC-CCUGCgCGAGGCcGuGCUgACc -3' miRNA: 3'- uCCCGuGGAUGaGCUCCGuC-CGAaUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home