Results 81 - 85 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28756 | 3' | -56.9 | NC_006146.1 | + | 22439 | 0.7 | 0.638774 |
Target: 5'- cGGGCGCCUcCUCGGguucagccgcuGGCuGGCUcUGCc -3' miRNA: 3'- uCCCGUGGAuGAGCU-----------CCGuCCGA-AUG- -5' |
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28756 | 3' | -56.9 | NC_006146.1 | + | 25517 | 0.7 | 0.638774 |
Target: 5'- cGGGCGCCUcCUCGGguucagccgcuGGCuGGCUcUGCc -3' miRNA: 3'- uCCCGUGGAuGAGCU-----------CCGuCCGA-AUG- -5' |
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28756 | 3' | -56.9 | NC_006146.1 | + | 28595 | 0.7 | 0.638774 |
Target: 5'- cGGGCGCCUcCUCGGguucagccgcuGGCuGGCUcUGCc -3' miRNA: 3'- uCCCGUGGAuGAGCU-----------CCGuCCGA-AUG- -5' |
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28756 | 3' | -56.9 | NC_006146.1 | + | 12852 | 0.7 | 0.659226 |
Target: 5'- aGGaGGCGCCUGgggCGAGGCuggguGGCUggGCa -3' miRNA: 3'- -UC-CCGUGGAUga-GCUCCGu----CCGAa-UG- -5' |
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28756 | 3' | -56.9 | NC_006146.1 | + | 33998 | 0.75 | 0.393098 |
Target: 5'- cGGuGCACCUggaaggcagggggggGgUCGGGGCAGGCggGCg -3' miRNA: 3'- uCC-CGUGGA---------------UgAGCUCCGUCCGaaUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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