Results 61 - 80 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28756 | 5' | -59.9 | NC_006146.1 | + | 53115 | 0.68 | 0.660451 |
Target: 5'- aGGc-GGCCcGGCCCGGGGGagCGCg- -3' miRNA: 3'- aCCauUCGGuCCGGGCUCCCa-GUGga -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 114817 | 0.68 | 0.610654 |
Target: 5'- cUGGU-GGCCGacaccuacuuGGCCCGGuGGGaCGCCUu -3' miRNA: 3'- -ACCAuUCGGU----------CCGGGCU-CCCaGUGGA- -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 22115 | 0.68 | 0.649509 |
Target: 5'- gGGcAGGCCGGGUCUcgggucuGGGGGUCugUg -3' miRNA: 3'- aCCaUUCGGUCCGGG-------CUCCCAGugGa -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 88337 | 0.68 | 0.617623 |
Target: 5'- aUGG-AGGCCguuGGGCCCaGGGGGUUaaaggaggcccauaACCUg -3' miRNA: 3'- -ACCaUUCGG---UCCGGG-CUCCCAG--------------UGGA- -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 112511 | 0.68 | 0.620612 |
Target: 5'- cGGUccagGGGCCgguggaGGGCCU--GGGUCACCUc -3' miRNA: 3'- aCCA----UUCGG------UCCGGGcuCCCAGUGGA- -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 116395 | 0.68 | 0.620612 |
Target: 5'- aGGaggGAGCgGGGCCCuGGGGaGUCuCCUc -3' miRNA: 3'- aCCa--UUCGgUCCGGG-CUCC-CAGuGGA- -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 169977 | 0.68 | 0.640544 |
Target: 5'- cGGgaGGCCGGcgcgcGCCCG-GGGUC-CCg -3' miRNA: 3'- aCCauUCGGUC-----CGGGCuCCCAGuGGa -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 145439 | 0.67 | 0.690129 |
Target: 5'- gGGUcuuGGGCCugggAGGUCCGGGGuGUUgaGCCUg -3' miRNA: 3'- aCCA---UUCGG----UCCGGGCUCC-CAG--UGGA- -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 142361 | 0.67 | 0.690129 |
Target: 5'- gGGUcuuGGGCCugggAGGUCCGGGGuGUUgaGCCUg -3' miRNA: 3'- aCCA---UUCGG----UCCGGGCUCC-CAG--UGGA- -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 104222 | 0.67 | 0.719396 |
Target: 5'- cGGggAAGCUGGGCUUccGGGUCAUCa -3' miRNA: 3'- aCCa-UUCGGUCCGGGcuCCCAGUGGa -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 86454 | 0.67 | 0.670376 |
Target: 5'- gGGgcAGCUGGGCuUUGAGGGggcaGCCUg -3' miRNA: 3'- aCCauUCGGUCCG-GGCUCCCag--UGGA- -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 148517 | 0.67 | 0.690129 |
Target: 5'- gGGUcuuGGGCCugggAGGUCCGGGGuGUUgaGCCUg -3' miRNA: 3'- aCCA---UUCGG----UCCGGGCUCC-CAG--UGGA- -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 151595 | 0.67 | 0.690129 |
Target: 5'- gGGUcuuGGGCCugggAGGUCCGGGGuGUUgaGCCUg -3' miRNA: 3'- aCCA---UUCGG----UCCGGGCUCC-CAG--UGGA- -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 157750 | 0.67 | 0.690129 |
Target: 5'- gGGUcuuGGGCCugggAGGUCCGGGGuGUUgaGCCUg -3' miRNA: 3'- aCCA---UUCGG----UCCGGGCUCC-CAG--UGGA- -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 59839 | 0.67 | 0.703852 |
Target: 5'- cGGUGcGGCuCAGGCUCccgugacucagggagGAGGuGUCGCCa -3' miRNA: 3'- aCCAU-UCG-GUCCGGG---------------CUCC-CAGUGGa -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 14811 | 0.67 | 0.7097 |
Target: 5'- aGGccGGCCGGGCCgGAGGaGggCACg- -3' miRNA: 3'- aCCauUCGGUCCGGgCUCC-Ca-GUGga -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 42381 | 0.67 | 0.7097 |
Target: 5'- gGGUGGGCgAGgggcGCCCcAGGGcCACCc -3' miRNA: 3'- aCCAUUCGgUC----CGGGcUCCCaGUGGa -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 92087 | 0.67 | 0.690129 |
Target: 5'- gGGgcGGCCcGGCCUGGGGcugCugCUg -3' miRNA: 3'- aCCauUCGGuCCGGGCUCCca-GugGA- -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 128876 | 0.67 | 0.713586 |
Target: 5'- gGcGUGAGcCCGGGCCCaGAGGGaguagcucggcaacgUCACg- -3' miRNA: 3'- aC-CAUUC-GGUCCGGG-CUCCC---------------AGUGga -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 41099 | 0.67 | 0.723254 |
Target: 5'- aGGgGAGCCAGGCgUGcagggccuccacuuuAGGGUC-CCg -3' miRNA: 3'- aCCaUUCGGUCCGgGC---------------UCCCAGuGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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