miRNA display CGI


Results 81 - 100 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28756 5' -59.9 NC_006146.1 + 127573 0.69 0.571044
Target:  5'- aGGUGGuGUCGGuGCUCGAGGG-CACUa -3'
miRNA:   3'- aCCAUU-CGGUC-CGGGCUCCCaGUGGa -5'
28756 5' -59.9 NC_006146.1 + 128815 0.66 0.748023
Target:  5'- aGGgagGGGCgGcGGCagaGGGGGUCACCc -3'
miRNA:   3'- aCCa--UUCGgU-CCGgg-CUCCCAGUGGa -5'
28756 5' -59.9 NC_006146.1 + 128876 0.67 0.713586
Target:  5'- gGcGUGAGcCCGGGCCCaGAGGGaguagcucggcaacgUCACg- -3'
miRNA:   3'- aC-CAUUC-GGUCCGGG-CUCCC---------------AGUGga -5'
28756 5' -59.9 NC_006146.1 + 129245 0.66 0.738566
Target:  5'- cGGgcccAGGUgAGGCgCGAGGGUCAg-- -3'
miRNA:   3'- aCCa---UUCGgUCCGgGCUCCCAGUgga -5'
28756 5' -59.9 NC_006146.1 + 137014 0.7 0.522488
Target:  5'- gGGUAGGCCGGGCacaccCCGGGGaGgagGCCg -3'
miRNA:   3'- aCCAUUCGGUCCG-----GGCUCC-Cag-UGGa -5'
28756 5' -59.9 NC_006146.1 + 137201 0.72 0.422278
Target:  5'- gGGUAGGCCGGGCacaccCCGGGGaGgaaGCCg -3'
miRNA:   3'- aCCAUUCGGUCCG-----GGCUCC-Cag-UGGa -5'
28756 5' -59.9 NC_006146.1 + 137784 0.73 0.354782
Target:  5'- gGGUGGGCCuGGUCCGccggauccgcuucgGGGGUcCGCCg -3'
miRNA:   3'- aCCAUUCGGuCCGGGC--------------UCCCA-GUGGa -5'
28756 5' -59.9 NC_006146.1 + 137860 0.68 0.654485
Target:  5'- gGGUGGGCguguccCGGGCCCcgccccgggccggcaGGGGGUCcCCg -3'
miRNA:   3'- aCCAUUCG------GUCCGGG---------------CUCCCAGuGGa -5'
28756 5' -59.9 NC_006146.1 + 138235 0.66 0.72902
Target:  5'- aGGUGuGUCAuuuuaGCCCGuuGGGUUACCUg -3'
miRNA:   3'- aCCAUuCGGUc----CGGGCu-CCCAGUGGA- -5'
28756 5' -59.9 NC_006146.1 + 141382 1.08 0.001575
Target:  5'- aUGGUAAGCCAGGCCCGAGGGUCACCUa -3'
miRNA:   3'- -ACCAUUCGGUCCGGGCUCCCAGUGGA- -5'
28756 5' -59.9 NC_006146.1 + 142361 0.67 0.690129
Target:  5'- gGGUcuuGGGCCugggAGGUCCGGGGuGUUgaGCCUg -3'
miRNA:   3'- aCCA---UUCGG----UCCGGGCUCC-CAG--UGGA- -5'
28756 5' -59.9 NC_006146.1 + 143030 0.72 0.431788
Target:  5'- aUGGggAAGCCggaguccagagGGGCCCGAGGGccugaaaggccccggCGCCUg -3'
miRNA:   3'- -ACCa-UUCGG-----------UCCGGGCUCCCa--------------GUGGA- -5'
28756 5' -59.9 NC_006146.1 + 144460 1.08 0.001575
Target:  5'- aUGGUAAGCCAGGCCCGAGGGUCACCUa -3'
miRNA:   3'- -ACCAUUCGGUCCGGGCUCCCAGUGGA- -5'
28756 5' -59.9 NC_006146.1 + 145127 0.67 0.670376
Target:  5'- aGGccUGGGCCAGGCUCuGGccGGUCACUa -3'
miRNA:   3'- aCC--AUUCGGUCCGGGcUC--CCAGUGGa -5'
28756 5' -59.9 NC_006146.1 + 145439 0.67 0.690129
Target:  5'- gGGUcuuGGGCCugggAGGUCCGGGGuGUUgaGCCUg -3'
miRNA:   3'- aCCA---UUCGG----UCCGGGCUCC-CAG--UGGA- -5'
28756 5' -59.9 NC_006146.1 + 146108 0.72 0.431788
Target:  5'- aUGGggAAGCCggaguccagagGGGCCCGAGGGccugaaaggccccggCGCCUg -3'
miRNA:   3'- -ACCa-UUCGG-----------UCCGGGCUCCCa--------------GUGGA- -5'
28756 5' -59.9 NC_006146.1 + 146851 0.66 0.757384
Target:  5'- ---cGGGCCuGGCUCGGGGccgcGUCACCc -3'
miRNA:   3'- accaUUCGGuCCGGGCUCC----CAGUGGa -5'
28756 5' -59.9 NC_006146.1 + 147538 1.08 0.001575
Target:  5'- aUGGUAAGCCAGGCCCGAGGGUCACCUa -3'
miRNA:   3'- -ACCAUUCGGUCCGGGCUCCCAGUGGA- -5'
28756 5' -59.9 NC_006146.1 + 148517 0.67 0.690129
Target:  5'- gGGUcuuGGGCCugggAGGUCCGGGGuGUUgaGCCUg -3'
miRNA:   3'- aCCA---UUCGG----UCCGGGCUCC-CAG--UGGA- -5'
28756 5' -59.9 NC_006146.1 + 149186 0.72 0.431788
Target:  5'- aUGGggAAGCCggaguccagagGGGCCCGAGGGccugaaaggccccggCGCCUg -3'
miRNA:   3'- -ACCa-UUCGG-----------UCCGGGCUCCCa--------------GUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.