Results 41 - 60 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28756 | 5' | -59.9 | NC_006146.1 | + | 145127 | 0.67 | 0.670376 |
Target: 5'- aGGccUGGGCCAGGCUCuGGccGGUCACUa -3' miRNA: 3'- aCC--AUUCGGUCCGGGcUC--CCAGUGGa -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 144460 | 1.08 | 0.001575 |
Target: 5'- aUGGUAAGCCAGGCCCGAGGGUCACCUa -3' miRNA: 3'- -ACCAUUCGGUCCGGGCUCCCAGUGGA- -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 143030 | 0.72 | 0.431788 |
Target: 5'- aUGGggAAGCCggaguccagagGGGCCCGAGGGccugaaaggccccggCGCCUg -3' miRNA: 3'- -ACCa-UUCGG-----------UCCGGGCUCCCa--------------GUGGA- -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 142361 | 0.67 | 0.690129 |
Target: 5'- gGGUcuuGGGCCugggAGGUCCGGGGuGUUgaGCCUg -3' miRNA: 3'- aCCA---UUCGG----UCCGGGCUCC-CAG--UGGA- -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 141382 | 1.08 | 0.001575 |
Target: 5'- aUGGUAAGCCAGGCCCGAGGGUCACCUa -3' miRNA: 3'- -ACCAUUCGGUCCGGGCUCCCAGUGGA- -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 138235 | 0.66 | 0.72902 |
Target: 5'- aGGUGuGUCAuuuuaGCCCGuuGGGUUACCUg -3' miRNA: 3'- aCCAUuCGGUc----CGGGCu-CCCAGUGGA- -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 137860 | 0.68 | 0.654485 |
Target: 5'- gGGUGGGCguguccCGGGCCCcgccccgggccggcaGGGGGUCcCCg -3' miRNA: 3'- aCCAUUCG------GUCCGGG---------------CUCCCAGuGGa -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 137784 | 0.73 | 0.354782 |
Target: 5'- gGGUGGGCCuGGUCCGccggauccgcuucgGGGGUcCGCCg -3' miRNA: 3'- aCCAUUCGGuCCGGGC--------------UCCCA-GUGGa -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 137201 | 0.72 | 0.422278 |
Target: 5'- gGGUAGGCCGGGCacaccCCGGGGaGgaaGCCg -3' miRNA: 3'- aCCAUUCGGUCCG-----GGCUCC-Cag-UGGa -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 137014 | 0.7 | 0.522488 |
Target: 5'- gGGUAGGCCGGGCacaccCCGGGGaGgagGCCg -3' miRNA: 3'- aCCAUUCGGUCCG-----GGCUCC-Cag-UGGa -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 129245 | 0.66 | 0.738566 |
Target: 5'- cGGgcccAGGUgAGGCgCGAGGGUCAg-- -3' miRNA: 3'- aCCa---UUCGgUCCGgGCUCCCAGUgga -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 128876 | 0.67 | 0.713586 |
Target: 5'- gGcGUGAGcCCGGGCCCaGAGGGaguagcucggcaacgUCACg- -3' miRNA: 3'- aC-CAUUC-GGUCCGGG-CUCCC---------------AGUGga -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 128815 | 0.66 | 0.748023 |
Target: 5'- aGGgagGGGCgGcGGCagaGGGGGUCACCc -3' miRNA: 3'- aCCa--UUCGgU-CCGgg-CUCCCAGUGGa -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 127573 | 0.69 | 0.571044 |
Target: 5'- aGGUGGuGUCGGuGCUCGAGGG-CACUa -3' miRNA: 3'- aCCAUU-CGGUC-CGGGCUCCCaGUGGa -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 126632 | 0.69 | 0.580901 |
Target: 5'- cGGUGGGCacaccccgGGGCCCGcAGGGgcaauggaCACCg -3' miRNA: 3'- aCCAUUCGg-------UCCGGGC-UCCCa-------GUGGa -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 126062 | 0.68 | 0.630577 |
Target: 5'- gGGUAGGguaaaCGGGCaCGAGGGgCGCCg -3' miRNA: 3'- aCCAUUCg----GUCCGgGCUCCCaGUGGa -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 117979 | 0.66 | 0.748023 |
Target: 5'- cGGacgAGGCCAGcGCCCccgGGGGGcCACg- -3' miRNA: 3'- aCCa--UUCGGUC-CGGG---CUCCCaGUGga -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 116395 | 0.68 | 0.620612 |
Target: 5'- aGGaggGAGCgGGGCCCuGGGGaGUCuCCUc -3' miRNA: 3'- aCCa--UUCGgUCCGGG-CUCC-CAGuGGA- -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 116097 | 0.72 | 0.388786 |
Target: 5'- aUGGUGgcGGCCA--CCCGAGGGUCcCCg -3' miRNA: 3'- -ACCAU--UCGGUccGGGCUCCCAGuGGa -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 115237 | 0.66 | 0.757384 |
Target: 5'- aGG-GAGCCcagcugagAGGCCC-AGGGauUCACCg -3' miRNA: 3'- aCCaUUCGG--------UCCGGGcUCCC--AGUGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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