Results 81 - 100 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28756 | 5' | -59.9 | NC_006146.1 | + | 62838 | 0.69 | 0.580901 |
Target: 5'- cUGGccgccguGGCCAGGCCgGAGGuucucuUCACCa -3' miRNA: 3'- -ACCau-----UCGGUCCGGgCUCCc-----AGUGGa -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 61524 | 0.66 | 0.76664 |
Target: 5'- aGGgaGGCCuccGGuGUCCGGGGGaCGCCc -3' miRNA: 3'- aCCauUCGG---UC-CGGGCUCCCaGUGGa -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 60939 | 0.7 | 0.492256 |
Target: 5'- aGGUAGagacuGCUuucauugAGGCCCGgggguggGGGGUCACCUu -3' miRNA: 3'- aCCAUU-----CGG-------UCCGGGC-------UCCCAGUGGA- -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 59839 | 0.67 | 0.703852 |
Target: 5'- cGGUGcGGCuCAGGCUCccgugacucagggagGAGGuGUCGCCa -3' miRNA: 3'- aCCAU-UCG-GUCCGGG---------------CUCC-CAGUGGa -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 57224 | 0.71 | 0.439661 |
Target: 5'- cGG-AGGCCGGGCCCGGGcccgaGcCACCUc -3' miRNA: 3'- aCCaUUCGGUCCGGGCUCc----CaGUGGA- -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 56583 | 0.71 | 0.475608 |
Target: 5'- gGGgcGGCCGGGCgCCGAGcccgccgccGGUCuCCUc -3' miRNA: 3'- aCCauUCGGUCCG-GGCUC---------CCAGuGGA- -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 56506 | 0.66 | 0.76664 |
Target: 5'- ----cAGUCGGGCCgCGGGGucGUCGCCg -3' miRNA: 3'- accauUCGGUCCGG-GCUCC--CAGUGGa -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 56393 | 0.67 | 0.699942 |
Target: 5'- gGGUAAGCguGGCCgcucgCGAGGGUgAg-- -3' miRNA: 3'- aCCAUUCGguCCGG-----GCUCCCAgUgga -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 55816 | 0.66 | 0.757384 |
Target: 5'- aUGaGUAcAGCCAGcGCCUGGGuGGgCACCc -3' miRNA: 3'- -AC-CAU-UCGGUC-CGGGCUC-CCaGUGGa -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 53115 | 0.68 | 0.660451 |
Target: 5'- aGGc-GGCCcGGCCCGGGGGagCGCg- -3' miRNA: 3'- aCCauUCGGuCCGGGCUCCCa-GUGga -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 52992 | 0.66 | 0.76664 |
Target: 5'- cGGaccugccGGCCGuGGCCgCGGGGGUCgaugACCa -3' miRNA: 3'- aCCau-----UCGGU-CCGG-GCUCCCAG----UGGa -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 52909 | 0.66 | 0.757384 |
Target: 5'- aUGGUcuGCguGGCCCcccGGGGG-CGCUg -3' miRNA: 3'- -ACCAuuCGguCCGGG---CUCCCaGUGGa -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 51571 | 0.66 | 0.757384 |
Target: 5'- cUGGgc-GCCgccgggagGGGCCCGGGGGa-GCCa -3' miRNA: 3'- -ACCauuCGG--------UCCGGGCUCCCagUGGa -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 50531 | 0.67 | 0.670376 |
Target: 5'- aGGUcagGAGCCgcuccAGGuCCCGGGuGGgCACCUg -3' miRNA: 3'- aCCA---UUCGG-----UCC-GGGCUC-CCaGUGGA- -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 46905 | 0.71 | 0.457446 |
Target: 5'- aGcGUAGGCCGGGUUgaGGGGGUCGCa- -3' miRNA: 3'- aC-CAUUCGGUCCGGg-CUCCCAGUGga -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 44777 | 0.66 | 0.738566 |
Target: 5'- gGGUGccguGCCGGGCUCaGGGGGgCGCa- -3' miRNA: 3'- aCCAUu---CGGUCCGGG-CUCCCaGUGga -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 42381 | 0.67 | 0.7097 |
Target: 5'- gGGUGGGCgAGgggcGCCCcAGGGcCACCc -3' miRNA: 3'- aCCAUUCGgUC----CGGGcUCCCaGUGGa -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 41402 | 0.71 | 0.475608 |
Target: 5'- aGGUGGGCCugauguccGCCUGGGGGgCACCc -3' miRNA: 3'- aCCAUUCGGuc------CGGGCUCCCaGUGGa -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 41099 | 0.67 | 0.723254 |
Target: 5'- aGGgGAGCCAGGCgUGcagggccuccacuuuAGGGUC-CCg -3' miRNA: 3'- aCCaUUCGGUCCGgGC---------------UCCCAGuGGa -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 40733 | 0.67 | 0.7097 |
Target: 5'- cGGgcAGgCGGGCCCGugcuuGGGGcUgGCCa -3' miRNA: 3'- aCCauUCgGUCCGGGC-----UCCC-AgUGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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