miRNA display CGI


Results 81 - 100 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28756 5' -59.9 NC_006146.1 + 161751 0.76 0.232024
Target:  5'- gGGUGgcGGCUgAGGUCCGAGGGggCGCCUg -3'
miRNA:   3'- aCCAU--UCGG-UCCGGGCUCCCa-GUGGA- -5'
28756 5' -59.9 NC_006146.1 + 143030 0.72 0.431788
Target:  5'- aUGGggAAGCCggaguccagagGGGCCCGAGGGccugaaaggccccggCGCCUg -3'
miRNA:   3'- -ACCa-UUCGG-----------UCCGGGCUCCCa--------------GUGGA- -5'
28756 5' -59.9 NC_006146.1 + 24049 0.72 0.411203
Target:  5'- gGGUgacgcggccccGAGCCAGGCCCGGGcucuacgcuggcgcGGccUCGCCUg -3'
miRNA:   3'- aCCA-----------UUCGGUCCGGGCUC--------------CC--AGUGGA- -5'
28756 5' -59.9 NC_006146.1 + 88812 0.66 0.748023
Target:  5'- cUGGgcauguuuGGCUGGGCCUGAGGcUC-CCUg -3'
miRNA:   3'- -ACCau------UCGGUCCGGGCUCCcAGuGGA- -5'
28756 5' -59.9 NC_006146.1 + 55816 0.66 0.757384
Target:  5'- aUGaGUAcAGCCAGcGCCUGGGuGGgCACCc -3'
miRNA:   3'- -AC-CAU-UCGGUC-CGGGCUC-CCaGUGGa -5'
28756 5' -59.9 NC_006146.1 + 150616 1.08 0.001575
Target:  5'- aUGGUAAGCCAGGCCCGAGGGUCACCUa -3'
miRNA:   3'- -ACCAUUCGGUCCGGGCUCCCAGUGGA- -5'
28756 5' -59.9 NC_006146.1 + 104222 0.67 0.719396
Target:  5'- cGGggAAGCUGGGCUUccGGGUCAUCa -3'
miRNA:   3'- aCCa-UUCGGUCCGGGcuCCCAGUGGa -5'
28756 5' -59.9 NC_006146.1 + 126632 0.69 0.580901
Target:  5'- cGGUGGGCacaccccgGGGCCCGcAGGGgcaauggaCACCg -3'
miRNA:   3'- aCCAUUCGg-------UCCGGGC-UCCCa-------GUGGa -5'
28756 5' -59.9 NC_006146.1 + 114817 0.68 0.610654
Target:  5'- cUGGU-GGCCGacaccuacuuGGCCCGGuGGGaCGCCUu -3'
miRNA:   3'- -ACCAuUCGGU----------CCGGGCU-CCCaGUGGA- -5'
28756 5' -59.9 NC_006146.1 + 88337 0.68 0.617623
Target:  5'- aUGG-AGGCCguuGGGCCCaGGGGGUUaaaggaggcccauaACCUg -3'
miRNA:   3'- -ACCaUUCGG---UCCGGG-CUCCCAG--------------UGGA- -5'
28756 5' -59.9 NC_006146.1 + 112511 0.68 0.620612
Target:  5'- cGGUccagGGGCCgguggaGGGCCU--GGGUCACCUc -3'
miRNA:   3'- aCCA----UUCGG------UCCGGGcuCCCAGUGGA- -5'
28756 5' -59.9 NC_006146.1 + 77923 0.74 0.334527
Target:  5'- cGGgcGGCCucgcAGGUgCCGGGGGUCGCUg -3'
miRNA:   3'- aCCauUCGG----UCCG-GGCUCCCAGUGGa -5'
28756 5' -59.9 NC_006146.1 + 86454 0.67 0.670376
Target:  5'- gGGgcAGCUGGGCuUUGAGGGggcaGCCUg -3'
miRNA:   3'- aCCauUCGGUCCG-GGCUCCCag--UGGA- -5'
28756 5' -59.9 NC_006146.1 + 142361 0.67 0.690129
Target:  5'- gGGUcuuGGGCCugggAGGUCCGGGGuGUUgaGCCUg -3'
miRNA:   3'- aCCA---UUCGG----UCCGGGCUCC-CAG--UGGA- -5'
28756 5' -59.9 NC_006146.1 + 145439 0.67 0.690129
Target:  5'- gGGUcuuGGGCCugggAGGUCCGGGGuGUUgaGCCUg -3'
miRNA:   3'- aCCA---UUCGG----UCCGGGCUCC-CAG--UGGA- -5'
28756 5' -59.9 NC_006146.1 + 156771 1.08 0.001575
Target:  5'- aUGGUAAGCCAGGCCCGAGGGUCACCUa -3'
miRNA:   3'- -ACCAUUCGGUCCGGGCUCCCAGUGGA- -5'
28756 5' -59.9 NC_006146.1 + 116395 0.68 0.620612
Target:  5'- aGGaggGAGCgGGGCCCuGGGGaGUCuCCUc -3'
miRNA:   3'- aCCa--UUCGgUCCGGG-CUCC-CAGuGGA- -5'
28756 5' -59.9 NC_006146.1 + 141382 1.08 0.001575
Target:  5'- aUGGUAAGCCAGGCCCGAGGGUCACCUa -3'
miRNA:   3'- -ACCAUUCGGUCCGGGCUCCCAGUGGA- -5'
28756 5' -59.9 NC_006146.1 + 144460 1.08 0.001575
Target:  5'- aUGGUAAGCCAGGCCCGAGGGUCACCUa -3'
miRNA:   3'- -ACCAUUCGGUCCGGGCUCCCAGUGGA- -5'
28756 5' -59.9 NC_006146.1 + 147538 1.08 0.001575
Target:  5'- aUGGUAAGCCAGGCCCGAGGGUCACCUa -3'
miRNA:   3'- -ACCAUUCGGUCCGGGCUCCCAGUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.