Results 101 - 120 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28756 | 5' | -59.9 | NC_006146.1 | + | 86544 | 0.71 | 0.484823 |
Target: 5'- gGGgcAGCUGGGCuuGAGGGgCAgCUg -3' miRNA: 3'- aCCauUCGGUCCGggCUCCCaGUgGA- -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 166265 | 0.71 | 0.457446 |
Target: 5'- gGGUAuauGUUcuGGGCCCGcAGGGUCugCa -3' miRNA: 3'- aCCAUu--CGG--UCCGGGC-UCCCAGugGa -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 57224 | 0.71 | 0.439661 |
Target: 5'- cGG-AGGCCGGGCCCGGGcccgaGcCACCUc -3' miRNA: 3'- aCCaUUCGGUCCGGGCUCc----CaGUGGA- -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 158421 | 0.72 | 0.431788 |
Target: 5'- aUGGggAAGCCggaguccagagGGGCCCGAGGGccugaaaggccccggCGCCUg -3' miRNA: 3'- -ACCa-UUCGG-----------UCCGGGCUCCCa--------------GUGGA- -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 155342 | 0.72 | 0.431788 |
Target: 5'- aUGGggAAGCCggaguccagagGGGCCCGAGGGccugaaaggccccggCGCCUg -3' miRNA: 3'- -ACCa-UUCGG-----------UCCGGGCUCCCa--------------GUGGA- -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 152264 | 0.72 | 0.431788 |
Target: 5'- aUGGggAAGCCggaguccagagGGGCCCGAGGGccugaaaggccccggCGCCUg -3' miRNA: 3'- -ACCa-UUCGG-----------UCCGGGCUCCCa--------------GUGGA- -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 149186 | 0.72 | 0.431788 |
Target: 5'- aUGGggAAGCCggaguccagagGGGCCCGAGGGccugaaaggccccggCGCCUg -3' miRNA: 3'- -ACCa-UUCGG-----------UCCGGGCUCCCa--------------GUGGA- -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 156771 | 1.08 | 0.001575 |
Target: 5'- aUGGUAAGCCAGGCCCGAGGGUCACCUa -3' miRNA: 3'- -ACCAUUCGGUCCGGGCUCCCAGUGGA- -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 86612 | 0.71 | 0.484823 |
Target: 5'- gGGgcAGCUGGGCuuGAGGGgCAgCUg -3' miRNA: 3'- aCCauUCGGUCCGggCUCCCaGUgGA- -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 33187 | 0.71 | 0.484823 |
Target: 5'- gGGUAGGcCCGGGCacccCCGGGGGgagGCCg -3' miRNA: 3'- aCCAUUC-GGUCCG----GGCUCCCag-UGGa -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 143030 | 0.72 | 0.431788 |
Target: 5'- aUGGggAAGCCggaguccagagGGGCCCGAGGGccugaaaggccccggCGCCUg -3' miRNA: 3'- -ACCa-UUCGG-----------UCCGGGCUCCCa--------------GUGGA- -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 86454 | 0.67 | 0.670376 |
Target: 5'- gGGgcAGCUGGGCuUUGAGGGggcaGCCUg -3' miRNA: 3'- aCCauUCGGUCCG-GGCUCCCag--UGGA- -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 116395 | 0.68 | 0.620612 |
Target: 5'- aGGaggGAGCgGGGCCCuGGGGaGUCuCCUc -3' miRNA: 3'- aCCa--UUCGgUCCGGG-CUCC-CAGuGGA- -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 112511 | 0.68 | 0.620612 |
Target: 5'- cGGUccagGGGCCgguggaGGGCCU--GGGUCACCUc -3' miRNA: 3'- aCCA----UUCGG------UCCGGGcuCCCAGUGGA- -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 88337 | 0.68 | 0.617623 |
Target: 5'- aUGG-AGGCCguuGGGCCCaGGGGGUUaaaggaggcccauaACCUg -3' miRNA: 3'- -ACCaUUCGG---UCCGGG-CUCCCAG--------------UGGA- -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 114817 | 0.68 | 0.610654 |
Target: 5'- cUGGU-GGCCGacaccuacuuGGCCCGGuGGGaCGCCUu -3' miRNA: 3'- -ACCAuUCGGU----------CCGGGCU-CCCaGUGGA- -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 161751 | 0.76 | 0.232024 |
Target: 5'- gGGUGgcGGCUgAGGUCCGAGGGggCGCCUg -3' miRNA: 3'- aCCAU--UCGG-UCCGGGCUCCCa-GUGGA- -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 77923 | 0.74 | 0.334527 |
Target: 5'- cGGgcGGCCucgcAGGUgCCGGGGGUCGCUg -3' miRNA: 3'- aCCauUCGG----UCCG-GGCUCCCAGUGGa -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 24049 | 0.72 | 0.411203 |
Target: 5'- gGGUgacgcggccccGAGCCAGGCCCGGGcucuacgcuggcgcGGccUCGCCUg -3' miRNA: 3'- aCCA-----------UUCGGUCCGGGCUC--------------CC--AGUGGA- -5' |
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28756 | 5' | -59.9 | NC_006146.1 | + | 137201 | 0.72 | 0.422278 |
Target: 5'- gGGUAGGCCGGGCacaccCCGGGGaGgaaGCCg -3' miRNA: 3'- aCCAUUCGGUCCG-----GGCUCC-Cag-UGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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