Results 61 - 80 of 349 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28758 | 3' | -56.1 | NC_006146.1 | + | 20726 | 0.66 | 0.905355 |
Target: 5'- gCUGGCGGCCU----GCGAGgacCCgcGCCa -3' miRNA: 3'- -GACCGCCGGGauguCGUUU---GGauCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 42050 | 0.67 | 0.878692 |
Target: 5'- --cGUGGCCCUuccuGU--GCCUGGCCg -3' miRNA: 3'- gacCGCCGGGAugu-CGuuUGGAUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 129643 | 0.67 | 0.885698 |
Target: 5'- -gGGCGcgugcuccGCCCgggaAUGGCGAgagcgcuuucGCCUGGCCa -3' miRNA: 3'- gaCCGC--------CGGGa---UGUCGUU----------UGGAUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 141640 | 0.67 | 0.885698 |
Target: 5'- -gGGCGGCU--GCGGgGGACgCUGGCa -3' miRNA: 3'- gaCCGCCGGgaUGUCgUUUG-GAUCGg -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 144717 | 0.67 | 0.885698 |
Target: 5'- -gGGCGGCU--GCGGgGGACgCUGGCa -3' miRNA: 3'- gaCCGCCGGgaUGUCgUUUG-GAUCGg -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 147795 | 0.67 | 0.885698 |
Target: 5'- -gGGCGGCU--GCGGgGGACgCUGGCa -3' miRNA: 3'- gaCCGCCGGgaUGUCgUUUG-GAUCGg -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 150686 | 0.67 | 0.885698 |
Target: 5'- -gGaGUGGCCagggggACGGaGGGCCUGGCCu -3' miRNA: 3'- gaC-CGCCGGga----UGUCgUUUGGAUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 150873 | 0.67 | 0.885698 |
Target: 5'- -gGGCGGCU--GCGGgGGACgCUGGCa -3' miRNA: 3'- gaCCGCCGGgaUGUCgUUUG-GAUCGg -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 153951 | 0.67 | 0.885698 |
Target: 5'- -gGGCGGCU--GCGGgGGACgCUGGCa -3' miRNA: 3'- gaCCGCCGGgaUGUCgUUUG-GAUCGg -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 157029 | 0.67 | 0.885698 |
Target: 5'- -gGGCGGCU--GCGGgGGACgCUGGCa -3' miRNA: 3'- gaCCGCCGGgaUGUCgUUUG-GAUCGg -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 13391 | 0.66 | 0.892479 |
Target: 5'- uCUGcGCGGCC--ACGGacuGCCUcAGCCa -3' miRNA: 3'- -GAC-CGCCGGgaUGUCguuUGGA-UCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 23448 | 0.66 | 0.892479 |
Target: 5'- -cGGCuGCCCgucuCGGCcuacgAGGCCcUGGCCg -3' miRNA: 3'- gaCCGcCGGGau--GUCG-----UUUGG-AUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 20119 | 0.66 | 0.892479 |
Target: 5'- -cGGUGGCCC---GGCAccuGCUgggGGCCa -3' miRNA: 3'- gaCCGCCGGGaugUCGUu--UGGa--UCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 43687 | 0.66 | 0.892479 |
Target: 5'- -aGGCccuccgagaaGGCCaCUACGGCGuccagguCCUGGCg -3' miRNA: 3'- gaCCG----------CCGG-GAUGUCGUuu-----GGAUCGg -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 40082 | 0.66 | 0.892479 |
Target: 5'- -cGGCGGagggCCUGCAGCGcGugCUgcAGCUc -3' miRNA: 3'- gaCCGCCg---GGAUGUCGU-UugGA--UCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 121773 | 0.66 | 0.897091 |
Target: 5'- cCUGGUGGCUUUGCAGaauuucgcuacucaCAGcACCUugagggagacGGCCg -3' miRNA: 3'- -GACCGCCGGGAUGUC--------------GUU-UGGA----------UCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 23779 | 0.66 | 0.898388 |
Target: 5'- aUGGCGGCCugcgcguCUGgGGCccGCUgAGCCc -3' miRNA: 3'- gACCGCCGG-------GAUgUCGuuUGGaUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 31263 | 0.66 | 0.899033 |
Target: 5'- -aGGUGuuaGCCCcACAGaaguGACUUGGCCa -3' miRNA: 3'- gaCCGC---CGGGaUGUCgu--UUGGAUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 127625 | 0.66 | 0.899033 |
Target: 5'- -gGGCGGCaCCgcCGGCccgcuGCCUcuuguccaGGCCg -3' miRNA: 3'- gaCCGCCG-GGauGUCGuu---UGGA--------UCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 137546 | 0.66 | 0.899033 |
Target: 5'- -cGGCGGaCCCaccgGCGGCc-ACCcGGCUg -3' miRNA: 3'- gaCCGCC-GGGa---UGUCGuuUGGaUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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