miRNA display CGI


Results 61 - 80 of 349 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28758 3' -56.1 NC_006146.1 + 20726 0.66 0.905355
Target:  5'- gCUGGCGGCCU----GCGAGgacCCgcGCCa -3'
miRNA:   3'- -GACCGCCGGGauguCGUUU---GGauCGG- -5'
28758 3' -56.1 NC_006146.1 + 42050 0.67 0.878692
Target:  5'- --cGUGGCCCUuccuGU--GCCUGGCCg -3'
miRNA:   3'- gacCGCCGGGAugu-CGuuUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 129643 0.67 0.885698
Target:  5'- -gGGCGcgugcuccGCCCgggaAUGGCGAgagcgcuuucGCCUGGCCa -3'
miRNA:   3'- gaCCGC--------CGGGa---UGUCGUU----------UGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 141640 0.67 0.885698
Target:  5'- -gGGCGGCU--GCGGgGGACgCUGGCa -3'
miRNA:   3'- gaCCGCCGGgaUGUCgUUUG-GAUCGg -5'
28758 3' -56.1 NC_006146.1 + 144717 0.67 0.885698
Target:  5'- -gGGCGGCU--GCGGgGGACgCUGGCa -3'
miRNA:   3'- gaCCGCCGGgaUGUCgUUUG-GAUCGg -5'
28758 3' -56.1 NC_006146.1 + 147795 0.67 0.885698
Target:  5'- -gGGCGGCU--GCGGgGGACgCUGGCa -3'
miRNA:   3'- gaCCGCCGGgaUGUCgUUUG-GAUCGg -5'
28758 3' -56.1 NC_006146.1 + 150686 0.67 0.885698
Target:  5'- -gGaGUGGCCagggggACGGaGGGCCUGGCCu -3'
miRNA:   3'- gaC-CGCCGGga----UGUCgUUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 150873 0.67 0.885698
Target:  5'- -gGGCGGCU--GCGGgGGACgCUGGCa -3'
miRNA:   3'- gaCCGCCGGgaUGUCgUUUG-GAUCGg -5'
28758 3' -56.1 NC_006146.1 + 153951 0.67 0.885698
Target:  5'- -gGGCGGCU--GCGGgGGACgCUGGCa -3'
miRNA:   3'- gaCCGCCGGgaUGUCgUUUG-GAUCGg -5'
28758 3' -56.1 NC_006146.1 + 157029 0.67 0.885698
Target:  5'- -gGGCGGCU--GCGGgGGACgCUGGCa -3'
miRNA:   3'- gaCCGCCGGgaUGUCgUUUG-GAUCGg -5'
28758 3' -56.1 NC_006146.1 + 13391 0.66 0.892479
Target:  5'- uCUGcGCGGCC--ACGGacuGCCUcAGCCa -3'
miRNA:   3'- -GAC-CGCCGGgaUGUCguuUGGA-UCGG- -5'
28758 3' -56.1 NC_006146.1 + 23448 0.66 0.892479
Target:  5'- -cGGCuGCCCgucuCGGCcuacgAGGCCcUGGCCg -3'
miRNA:   3'- gaCCGcCGGGau--GUCG-----UUUGG-AUCGG- -5'
28758 3' -56.1 NC_006146.1 + 20119 0.66 0.892479
Target:  5'- -cGGUGGCCC---GGCAccuGCUgggGGCCa -3'
miRNA:   3'- gaCCGCCGGGaugUCGUu--UGGa--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 43687 0.66 0.892479
Target:  5'- -aGGCccuccgagaaGGCCaCUACGGCGuccagguCCUGGCg -3'
miRNA:   3'- gaCCG----------CCGG-GAUGUCGUuu-----GGAUCGg -5'
28758 3' -56.1 NC_006146.1 + 40082 0.66 0.892479
Target:  5'- -cGGCGGagggCCUGCAGCGcGugCUgcAGCUc -3'
miRNA:   3'- gaCCGCCg---GGAUGUCGU-UugGA--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 121773 0.66 0.897091
Target:  5'- cCUGGUGGCUUUGCAGaauuucgcuacucaCAGcACCUugagggagacGGCCg -3'
miRNA:   3'- -GACCGCCGGGAUGUC--------------GUU-UGGA----------UCGG- -5'
28758 3' -56.1 NC_006146.1 + 23779 0.66 0.898388
Target:  5'- aUGGCGGCCugcgcguCUGgGGCccGCUgAGCCc -3'
miRNA:   3'- gACCGCCGG-------GAUgUCGuuUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 31263 0.66 0.899033
Target:  5'- -aGGUGuuaGCCCcACAGaaguGACUUGGCCa -3'
miRNA:   3'- gaCCGC---CGGGaUGUCgu--UUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 127625 0.66 0.899033
Target:  5'- -gGGCGGCaCCgcCGGCccgcuGCCUcuuguccaGGCCg -3'
miRNA:   3'- gaCCGCCG-GGauGUCGuu---UGGA--------UCGG- -5'
28758 3' -56.1 NC_006146.1 + 137546 0.66 0.899033
Target:  5'- -cGGCGGaCCCaccgGCGGCc-ACCcGGCUg -3'
miRNA:   3'- gaCCGCC-GGGa---UGUCGuuUGGaUCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.