miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28758 5' -53 NC_006146.1 + 10460 0.66 0.978798
Target:  5'- aGCGCCgCC--UUCGUgAUGGGg-GCCAc -3'
miRNA:   3'- -CGUGG-GGuuAAGCAgUAUCCgaCGGU- -5'
28758 5' -53 NC_006146.1 + 21328 0.7 0.848162
Target:  5'- cCGCCCCuuccaagaGUCAUucucggagGGGCUGCCGg -3'
miRNA:   3'- cGUGGGGuuaag---CAGUA--------UCCGACGGU- -5'
28758 5' -53 NC_006146.1 + 41208 0.69 0.907338
Target:  5'- gGCGCCCCAuccgCGggCAcUGGGCgcgcgugGCCAg -3'
miRNA:   3'- -CGUGGGGUuaa-GCa-GU-AUCCGa------CGGU- -5'
28758 5' -53 NC_006146.1 + 46441 0.66 0.981024
Target:  5'- gGC-CCCCAGgaaggCGgcggCGUAGGCcggaugcgUGCCGa -3'
miRNA:   3'- -CGuGGGGUUaa---GCa---GUAUCCG--------ACGGU- -5'
28758 5' -53 NC_006146.1 + 47725 0.66 0.976384
Target:  5'- aGCGCCCgGAgcucgUCGUCcgGGGCcuCCu -3'
miRNA:   3'- -CGUGGGgUUa----AGCAGuaUCCGacGGu -5'
28758 5' -53 NC_006146.1 + 47805 0.7 0.880392
Target:  5'- aGCGCCCaccgcCGUCucaugggcucGGGCUGCCAg -3'
miRNA:   3'- -CGUGGGguuaaGCAGua--------UCCGACGGU- -5'
28758 5' -53 NC_006146.1 + 55451 0.66 0.976384
Target:  5'- -aGCUCCAGgacUCuGUCAUGGGCagcaaGCCAc -3'
miRNA:   3'- cgUGGGGUUa--AG-CAGUAUCCGa----CGGU- -5'
28758 5' -53 NC_006146.1 + 56562 0.66 0.973775
Target:  5'- gGC-CCCCGuccaccucCGUCAgGGGCgGCCGg -3'
miRNA:   3'- -CGuGGGGUuaa-----GCAGUaUCCGaCGGU- -5'
28758 5' -53 NC_006146.1 + 81162 0.66 0.970962
Target:  5'- -aGCCCCAGcgcgaaagCGUC--GGGCUGUCGu -3'
miRNA:   3'- cgUGGGGUUaa------GCAGuaUCCGACGGU- -5'
28758 5' -53 NC_006146.1 + 102520 0.73 0.740385
Target:  5'- cCACCCCcg-UCGUCAUcaAGGCccugguUGCCAc -3'
miRNA:   3'- cGUGGGGuuaAGCAGUA--UCCG------ACGGU- -5'
28758 5' -53 NC_006146.1 + 102924 0.83 0.240605
Target:  5'- uGCGCCCCAAga--UCGUGGGCUGCCu -3'
miRNA:   3'- -CGUGGGGUUaagcAGUAUCCGACGGu -5'
28758 5' -53 NC_006146.1 + 109108 0.71 0.824648
Target:  5'- gGCGCgCCCAcUUCuGUaacgAGGCUGCCGu -3'
miRNA:   3'- -CGUG-GGGUuAAG-CAgua-UCCGACGGU- -5'
28758 5' -53 NC_006146.1 + 110022 0.69 0.919356
Target:  5'- -gGCCCCAGgcCGgucugCAgGGGCUGUCAu -3'
miRNA:   3'- cgUGGGGUUaaGCa----GUaUCCGACGGU- -5'
28758 5' -53 NC_006146.1 + 112811 0.66 0.96794
Target:  5'- uGCGCCCCAcgUacagauaggUGUCGUAGuaGCgcaggGCCGa -3'
miRNA:   3'- -CGUGGGGUuaA---------GCAGUAUC--CGa----CGGU- -5'
28758 5' -53 NC_006146.1 + 115333 0.69 0.919356
Target:  5'- gGCACCCCGGacUCgGUCAUcgAGGCcuuccugGCCGg -3'
miRNA:   3'- -CGUGGGGUUa-AG-CAGUA--UCCGa------CGGU- -5'
28758 5' -53 NC_006146.1 + 122314 0.66 0.981024
Target:  5'- cCACCCCca-UCGUCu--GGCucuugUGCCAg -3'
miRNA:   3'- cGUGGGGuuaAGCAGuauCCG-----ACGGU- -5'
28758 5' -53 NC_006146.1 + 127380 0.66 0.981024
Target:  5'- cGCGCCCCucGUggaggUGUCuugGGGCUggGCCc -3'
miRNA:   3'- -CGUGGGGu-UAa----GCAGua-UCCGA--CGGu -5'
28758 5' -53 NC_006146.1 + 130891 0.71 0.841599
Target:  5'- -uGCCCCGucugaccgGUCAaAGGCUGCCGg -3'
miRNA:   3'- cgUGGGGUuaag----CAGUaUCCGACGGU- -5'
28758 5' -53 NC_006146.1 + 131477 0.69 0.894342
Target:  5'- uGCACCCaGGUggGUC-UGGGgUGCCAg -3'
miRNA:   3'- -CGUGGGgUUAagCAGuAUCCgACGGU- -5'
28758 5' -53 NC_006146.1 + 132744 0.7 0.887484
Target:  5'- -aGCCCCGGUUC-UCcgGGGCcggaUGCCGc -3'
miRNA:   3'- cgUGGGGUUAAGcAGuaUCCG----ACGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.