miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28759 3' -44.8 NC_006146.1 + 155787 0.66 0.999998
Target:  5'- -aUGGGuGGCUGUguguaGUGUgUGCCUGg -3'
miRNA:   3'- gaAUUUuCCGACAac---CAUAgAUGGAC- -5'
28759 3' -44.8 NC_006146.1 + 152709 0.66 0.999998
Target:  5'- -aUGGGuGGCUGUguguaGUGUgUGCCUGg -3'
miRNA:   3'- gaAUUUuCCGACAac---CAUAgAUGGAC- -5'
28759 3' -44.8 NC_006146.1 + 149632 0.66 0.999998
Target:  5'- -aUGGGuGGCUGUguguaGUGUgUGCCUGg -3'
miRNA:   3'- gaAUUUuCCGACAac---CAUAgAUGGAC- -5'
28759 3' -44.8 NC_006146.1 + 146554 0.66 0.999998
Target:  5'- -aUGGGuGGCUGUguguaGUGUgUGCCUGg -3'
miRNA:   3'- gaAUUUuCCGACAac---CAUAgAUGGAC- -5'
28759 3' -44.8 NC_006146.1 + 143476 0.66 0.999998
Target:  5'- -aUGGGuGGCUGUguguaGUGUgUGCCUGg -3'
miRNA:   3'- gaAUUUuCCGACAac---CAUAgAUGGAC- -5'
28759 3' -44.8 NC_006146.1 + 97567 0.66 0.999998
Target:  5'- --gAAGGGGCUGUUuGcGaAUCUGCaCUGa -3'
miRNA:   3'- gaaUUUUCCGACAA-C-CaUAGAUG-GAC- -5'
28759 3' -44.8 NC_006146.1 + 134938 0.66 0.999995
Target:  5'- --aGAGAGGCUGgagGGUGauUCU-CUUGa -3'
miRNA:   3'- gaaUUUUCCGACaa-CCAU--AGAuGGAC- -5'
28759 3' -44.8 NC_006146.1 + 87407 0.66 0.999998
Target:  5'- --gGAGAGGCaccacgcuucUGUgaaugUGGU-UCUGCCUGa -3'
miRNA:   3'- gaaUUUUCCG----------ACA-----ACCAuAGAUGGAC- -5'
28759 3' -44.8 NC_006146.1 + 35376 0.66 0.999998
Target:  5'- uUUGGAGGGCUGUUuGGUGcaacugaagCUGCUc- -3'
miRNA:   3'- gAAUUUUCCGACAA-CCAUa--------GAUGGac -5'
28759 3' -44.8 NC_006146.1 + 90113 0.67 0.999988
Target:  5'- -aUGAGGGGCcuccucuggGGUAUCUccauGCCUGg -3'
miRNA:   3'- gaAUUUUCCGacaa-----CCAUAGA----UGGAC- -5'
28759 3' -44.8 NC_006146.1 + 154117 0.68 0.999971
Target:  5'- --gAAGGGGCUGUUGGacuuggccaucaUGUCggugACCa- -3'
miRNA:   3'- gaaUUUUCCGACAACC------------AUAGa---UGGac -5'
28759 3' -44.8 NC_006146.1 + 102392 0.69 0.999875
Target:  5'- ---cGGGGaGCUGgUGGUAUCUGucCCUGg -3'
miRNA:   3'- gaauUUUC-CGACaACCAUAGAU--GGAC- -5'
28759 3' -44.8 NC_006146.1 + 53445 0.75 0.973435
Target:  5'- --gAAAGGGCgg-UGGUGUCUGCCc- -3'
miRNA:   3'- gaaUUUUCCGacaACCAUAGAUGGac -5'
28759 3' -44.8 NC_006146.1 + 140381 1.09 0.035996
Target:  5'- gCUUAAAAGGCUGUUGGUAUCUACCUGc -3'
miRNA:   3'- -GAAUUUUCCGACAACCAUAGAUGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.