Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2876 | 3' | -55.1 | NC_001493.1 | + | 3054 | 0.71 | 0.684649 |
Target: 5'- cGACCUCGUCCGGGUCcUCGuccgccucuGAcuccaccucGGGCu -3' miRNA: 3'- -UUGGAGCAGGCCUAGuAGCu--------CU---------CCUG- -5' |
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2876 | 3' | -55.1 | NC_001493.1 | + | 76398 | 0.66 | 0.903811 |
Target: 5'- gGAgCUCGUgaaCCGGGUCAagGAaaagaccaaGAGGACu -3' miRNA: 3'- -UUgGAGCA---GGCCUAGUagCU---------CUCCUG- -5' |
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2876 | 3' | -55.1 | NC_001493.1 | + | 46487 | 0.66 | 0.903811 |
Target: 5'- gGACCaUCGUCgGGAaCGg-GAGAGGAg -3' miRNA: 3'- -UUGG-AGCAGgCCUaGUagCUCUCCUg -5' |
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2876 | 3' | -55.1 | NC_001493.1 | + | 129727 | 0.66 | 0.890584 |
Target: 5'- cGACCUCGUgacCCGGcccUCAacgagcUCGcGGGGGACg -3' miRNA: 3'- -UUGGAGCA---GGCCu--AGU------AGC-UCUCCUG- -5' |
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2876 | 3' | -55.1 | NC_001493.1 | + | 126171 | 0.67 | 0.868239 |
Target: 5'- --gCUCGaUCCGGGUCcuccgcgGUCGAGAcucucgGGACg -3' miRNA: 3'- uugGAGC-AGGCCUAG-------UAGCUCU------CCUG- -5' |
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2876 | 3' | -55.1 | NC_001493.1 | + | 10617 | 0.67 | 0.868239 |
Target: 5'- --gCUCGaUCCGGGUCcuccgcgGUCGAGAcucucgGGACg -3' miRNA: 3'- uugGAGC-AGGCCUAG-------UAGCUCU------CCUG- -5' |
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2876 | 3' | -55.1 | NC_001493.1 | + | 72841 | 0.67 | 0.853491 |
Target: 5'- --gCUCGUCUGGAUCAaccUGAaGAGGAg -3' miRNA: 3'- uugGAGCAGGCCUAGUa--GCU-CUCCUg -5' |
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2876 | 3' | -55.1 | NC_001493.1 | + | 114126 | 0.68 | 0.845426 |
Target: 5'- --aCUCGUCUugaacgGGAcCAUCuGGGAGGACg -3' miRNA: 3'- uugGAGCAGG------CCUaGUAG-CUCUCCUG- -5' |
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2876 | 3' | -55.1 | NC_001493.1 | + | 118233 | 0.68 | 0.8287 |
Target: 5'- -cCCUCGUCCGucuUCGUgaggggUGGGAGGGCc -3' miRNA: 3'- uuGGAGCAGGCcu-AGUA------GCUCUCCUG- -5' |
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2876 | 3' | -55.1 | NC_001493.1 | + | 2679 | 0.68 | 0.8287 |
Target: 5'- -cCCUCGUCCGucuUCGUgaggggUGGGAGGGCc -3' miRNA: 3'- uuGGAGCAGGCcu-AGUA------GCUCUCCUG- -5' |
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2876 | 3' | -55.1 | NC_001493.1 | + | 118609 | 0.71 | 0.684649 |
Target: 5'- cGACCUCGUCCGGGUCcUCGuccgccucuGAcuccaccucGGGCu -3' miRNA: 3'- -UUGGAGCAGGCCUAGuAGCu--------CU---------CCUG- -5' |
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2876 | 3' | -55.1 | NC_001493.1 | + | 61960 | 0.69 | 0.774361 |
Target: 5'- aAACUUUGUCUccaccgGGAUCAUCGAuagugacuucaGGGGGCa -3' miRNA: 3'- -UUGGAGCAGG------CCUAGUAGCU-----------CUCCUG- -5' |
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2876 | 3' | -55.1 | NC_001493.1 | + | 101161 | 0.69 | 0.763826 |
Target: 5'- -cCCUUuUCaCGGcgcuacuGUCAUCGAGGGGACg -3' miRNA: 3'- uuGGAGcAG-GCC-------UAGUAGCUCUCCUG- -5' |
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2876 | 3' | -55.1 | NC_001493.1 | + | 57796 | 0.71 | 0.684649 |
Target: 5'- -cCCUCGggaucacCCGGuUCAguaUCGAGGGGGCg -3' miRNA: 3'- uuGGAGCa------GGCCuAGU---AGCUCUCCUG- -5' |
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2876 | 3' | -55.1 | NC_001493.1 | + | 5878 | 1.07 | 0.004012 |
Target: 5'- gAACCUCGUCCGGAUCAUCGAGAGGGCg -3' miRNA: 3'- -UUGGAGCAGGCCUAGUAGCUCUCCUG- -5' |
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2876 | 3' | -55.1 | NC_001493.1 | + | 121432 | 1.07 | 0.004012 |
Target: 5'- gAACCUCGUCCGGAUCAUCGAGAGGGCg -3' miRNA: 3'- -UUGGAGCAGGCCUAGUAGCUCUCCUG- -5' |
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2876 | 3' | -55.1 | NC_001493.1 | + | 5992 | 1.08 | 0.003386 |
Target: 5'- gAACCUCGUCCGGAUCAUCGAGAGGACg -3' miRNA: 3'- -UUGGAGCAGGCCUAGUAGCUCUCCUG- -5' |
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2876 | 3' | -55.1 | NC_001493.1 | + | 6077 | 1.08 | 0.003386 |
Target: 5'- gAACCUCGUCCGGAUCAUCGAGAGGACg -3' miRNA: 3'- -UUGGAGCAGGCCUAGUAGCUCUCCUG- -5' |
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2876 | 3' | -55.1 | NC_001493.1 | + | 121546 | 1.08 | 0.003386 |
Target: 5'- gAACCUCGUCCGGAUCAUCGAGAGGACg -3' miRNA: 3'- -UUGGAGCAGGCCUAGUAGCUCUCCUG- -5' |
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2876 | 3' | -55.1 | NC_001493.1 | + | 8815 | 0.66 | 0.921833 |
Target: 5'- uGGCC-CGUCCGuGuccgcaccccucGUCAUuggCGAGGGGGCg -3' miRNA: 3'- -UUGGaGCAGGC-C------------UAGUA---GCUCUCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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