miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2876 5' -58.5 NC_001493.1 + 34105 0.67 0.710465
Target:  5'- uCUGCCAUauuuggggaugCUCGggGCucgGGAGUUGGGa -3'
miRNA:   3'- -GACGGUGa----------GAGCuaCG---CCUCGACCCa -5'
2876 5' -58.5 NC_001493.1 + 29865 0.68 0.639507
Target:  5'- -cGCCAg-CUCGAgagucgcguUGCGGAGCUccaGGGg -3'
miRNA:   3'- gaCGGUgaGAGCU---------ACGCCUCGA---CCCa -5'
2876 5' -58.5 NC_001493.1 + 121506 0.95 0.012539
Target:  5'- gCUaCCACUCUCGAUGCGGAGCUGGGUc -3'
miRNA:   3'- -GAcGGUGAGAGCUACGCCUCGACCCA- -5'
2876 5' -58.5 NC_001493.1 + 5952 0.95 0.012539
Target:  5'- gCUaCCACUCUCGAUGCGGAGCUGGGUc -3'
miRNA:   3'- -GAcGGUGAGAGCUACGCCUCGACCCA- -5'
2876 5' -58.5 NC_001493.1 + 121392 0.98 0.007413
Target:  5'- gCUGCCACUCUCGAUGCGGAGCUGGu- -3'
miRNA:   3'- -GACGGUGAGAGCUACGCCUCGACCca -5'
2876 5' -58.5 NC_001493.1 + 5838 0.98 0.007413
Target:  5'- gCUGCCACUCUCGAUGCGGAGCUGGu- -3'
miRNA:   3'- -GACGGUGAGAGCUACGCCUCGACCca -5'
2876 5' -58.5 NC_001493.1 + 121591 1.06 0.002012
Target:  5'- gCUGCCACUCUCGAUGCGGAGCUGGGUc -3'
miRNA:   3'- -GACGGUGAGAGCUACGCCUCGACCCA- -5'
2876 5' -58.5 NC_001493.1 + 6037 1.06 0.002012
Target:  5'- gCUGCCACUCUCGAUGCGGAGCUGGGUc -3'
miRNA:   3'- -GACGGUGAGAGCUACGCCUCGACCCA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.