miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28761 5' -49.6 NC_006146.1 + 48578 0.67 0.982957
Target:  5'- --aUCCGGGGCcucgggGGUCAGGg-- -3'
miRNA:   3'- uugGGGCCCCGa-----CUAGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 116799 0.67 0.986754
Target:  5'- aGGCCaCGGGGggGAgCAGGUUAg -3'
miRNA:   3'- -UUGGgGCCCCgaCUaGUCCAAU- -5'
28761 5' -49.6 NC_006146.1 + 127954 0.73 0.799176
Target:  5'- cGugCCCGGGGCgGAgggCAGGg-- -3'
miRNA:   3'- -UugGGGCCCCGaCUa--GUCCaau -5'
28761 5' -49.6 NC_006146.1 + 5238 0.74 0.779479
Target:  5'- cGGCCUCGGGGCUG-UgGGGUc- -3'
miRNA:   3'- -UUGGGGCCCCGACuAgUCCAau -5'
28761 5' -49.6 NC_006146.1 + 86321 0.67 0.986754
Target:  5'- aGGCCCUGggcaGGGUcuUGAUCAGGg-- -3'
miRNA:   3'- -UUGGGGC----CCCG--ACUAGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 44504 0.67 0.985691
Target:  5'- cGACCCCGGgcguccgggguuucaGGCUGA-CGGGc-- -3'
miRNA:   3'- -UUGGGGCC---------------CCGACUaGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 168367 0.74 0.759166
Target:  5'- -gUCCCGGGGCggggGGUCGGGc-- -3'
miRNA:   3'- uuGGGGCCCCGa---CUAGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 102647 0.67 0.982957
Target:  5'- --aCCCGGGGCUGG-CAGu--- -3'
miRNA:   3'- uugGGGCCCCGACUaGUCcaau -5'
28761 5' -49.6 NC_006146.1 + 51827 0.67 0.982748
Target:  5'- -uCCCCGGGGCggcgugGAggggggcUCGGGg-- -3'
miRNA:   3'- uuGGGGCCCCGa-----CU-------AGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 148510 0.71 0.906692
Target:  5'- gGACCCCGGGGCca---GGGUg- -3'
miRNA:   3'- -UUGGGGCCCCGacuagUCCAau -5'
28761 5' -49.6 NC_006146.1 + 35324 0.71 0.9132
Target:  5'- uAACUCCGGGcCUGAagAGGUUGa -3'
miRNA:   3'- -UUGGGGCCCcGACUagUCCAAU- -5'
28761 5' -49.6 NC_006146.1 + 138779 0.66 0.994271
Target:  5'- cACCCCGGGGUgacguggcaccccUGcgugcuuuUCAGGUg- -3'
miRNA:   3'- uUGGGGCCCCG-------------ACu-------AGUCCAau -5'
28761 5' -49.6 NC_006146.1 + 63002 0.66 0.994359
Target:  5'- gGGCUCCGGGaGuCUGG-CGGGUg- -3'
miRNA:   3'- -UUGGGGCCC-C-GACUaGUCCAau -5'
28761 5' -49.6 NC_006146.1 + 95517 0.66 0.994359
Target:  5'- --aUCCGGGaGCUG-UCGGGUg- -3'
miRNA:   3'- uugGGGCCC-CGACuAGUCCAau -5'
28761 5' -49.6 NC_006146.1 + 52699 0.67 0.980776
Target:  5'- cAGCUCCGGgcGGgaGGUCAGGg-- -3'
miRNA:   3'- -UUGGGGCC--CCgaCUAGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 52863 0.67 0.980776
Target:  5'- cGCCCgGGGGCUc--CAGGUc- -3'
miRNA:   3'- uUGGGgCCCCGAcuaGUCCAau -5'
28761 5' -49.6 NC_006146.1 + 57347 0.67 0.980776
Target:  5'- gGGCCCCGGGuGUcGGUgAGGg-- -3'
miRNA:   3'- -UUGGGGCCC-CGaCUAgUCCaau -5'
28761 5' -49.6 NC_006146.1 + 63645 0.69 0.95934
Target:  5'- gGGCaCCCGGGGgUGAUgaacUAGGUg- -3'
miRNA:   3'- -UUG-GGGCCCCgACUA----GUCCAau -5'
28761 5' -49.6 NC_006146.1 + 169572 0.7 0.941079
Target:  5'- -uCCCCGGGGCccGAgcgcgcgUCGGGUg- -3'
miRNA:   3'- uuGGGGCCCCGa-CU-------AGUCCAau -5'
28761 5' -49.6 NC_006146.1 + 167707 0.7 0.941079
Target:  5'- -uCCCCGGGGCccGAgcgcgcgUCGGGUg- -3'
miRNA:   3'- uuGGGGCCCCGa-CU-------AGUCCAau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.