Results 61 - 80 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28761 | 5' | -49.6 | NC_006146.1 | + | 41605 | 0.67 | 0.980776 |
Target: 5'- aGGCCCgGgGGGCUGGUCcgcuGGg-- -3' miRNA: 3'- -UUGGGgC-CCCGACUAGu---CCaau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 52699 | 0.67 | 0.980776 |
Target: 5'- cAGCUCCGGgcGGgaGGUCAGGg-- -3' miRNA: 3'- -UUGGGGCC--CCgaCUAGUCCaau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 52863 | 0.67 | 0.980776 |
Target: 5'- cGCCCgGGGGCUc--CAGGUc- -3' miRNA: 3'- uUGGGgCCCCGAcuaGUCCAau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 138779 | 0.66 | 0.994271 |
Target: 5'- cACCCCGGGGUgacguggcaccccUGcgugcuuuUCAGGUg- -3' miRNA: 3'- uUGGGGCCCCG-------------ACu-------AGUCCAau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 44820 | 0.66 | 0.994091 |
Target: 5'- aGGCCCCGcugcGGCUGGUgacggaggugggugUAGGUUAu -3' miRNA: 3'- -UUGGGGCc---CCGACUA--------------GUCCAAU- -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 4374 | 0.66 | 0.993425 |
Target: 5'- cGGCCCCGcGGGCUcccCAGGc-- -3' miRNA: 3'- -UUGGGGC-CCCGAcuaGUCCaau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 33343 | 0.66 | 0.993425 |
Target: 5'- uGCUCCGGGGCagc-CGGGUg- -3' miRNA: 3'- uUGGGGCCCCGacuaGUCCAau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 33221 | 0.66 | 0.993425 |
Target: 5'- uGCUCCGGGGCagc-CGGGUg- -3' miRNA: 3'- uUGGGGCCCCGacuaGUCCAau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 60960 | 0.66 | 0.991188 |
Target: 5'- aGGCCCgGGGGUggggGGUCAccuuGGUg- -3' miRNA: 3'- -UUGGGgCCCCGa---CUAGU----CCAau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 149939 | 0.66 | 0.989864 |
Target: 5'- uGCCCuCGGGGUUGA--GGGg-- -3' miRNA: 3'- uUGGG-GCCCCGACUagUCCaau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 58356 | 0.67 | 0.98839 |
Target: 5'- cGACCCCGGGuCUGAgcuccgaguUCgAGGUg- -3' miRNA: 3'- -UUGGGGCCCcGACU---------AG-UCCAau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 164055 | 0.67 | 0.986754 |
Target: 5'- cAAUCCCGGGGgUGAagggaggggcaUCAauGGUUAc -3' miRNA: 3'- -UUGGGGCCCCgACU-----------AGU--CCAAU- -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 86321 | 0.67 | 0.986754 |
Target: 5'- aGGCCCUGggcaGGGUcuUGAUCAGGg-- -3' miRNA: 3'- -UUGGGGC----CCCG--ACUAGUCCaau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 44504 | 0.67 | 0.985691 |
Target: 5'- cGACCCCGGgcguccgggguuucaGGCUGA-CGGGc-- -3' miRNA: 3'- -UUGGGGCC---------------CCGACUaGUCCaau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 102647 | 0.67 | 0.982957 |
Target: 5'- --aCCCGGGGCUGG-CAGu--- -3' miRNA: 3'- uugGGGCCCCGACUaGUCcaau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 56752 | 0.67 | 0.982957 |
Target: 5'- gGACgUCCGGGGCcUGAUCGcGGa-- -3' miRNA: 3'- -UUG-GGGCCCCG-ACUAGU-CCaau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 48578 | 0.67 | 0.982957 |
Target: 5'- --aUCCGGGGCcucgggGGUCAGGg-- -3' miRNA: 3'- uugGGGCCCCGa-----CUAGUCCaau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 97968 | 0.67 | 0.982957 |
Target: 5'- uGACCUCGGGGaaGAUgGGGc-- -3' miRNA: 3'- -UUGGGGCCCCgaCUAgUCCaau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 51827 | 0.67 | 0.982748 |
Target: 5'- -uCCCCGGGGCggcgugGAggggggcUCGGGg-- -3' miRNA: 3'- uuGGGGCCCCGa-----CU-------AGUCCaau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 57347 | 0.67 | 0.980776 |
Target: 5'- gGGCCCCGGGuGUcGGUgAGGg-- -3' miRNA: 3'- -UUGGGGCCC-CGaCUAgUCCaau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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