miRNA display CGI


Results 21 - 40 of 241 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28764 3' -54.6 NC_006146.1 + 90307 0.66 0.949051
Target:  5'- -aGGGGCagagGGGAGGGGccuaguAAGGGUg -3'
miRNA:   3'- gaCCCCGa---CCCUUUCUaccu--UUCCCG- -5'
28764 3' -54.6 NC_006146.1 + 39369 0.66 0.949051
Target:  5'- uCUGGGucccGGGAGGGUGaGAAAGGGg -3'
miRNA:   3'- -GACCCcgacCCUUUCUAC-CUUUCCCg -5'
28764 3' -54.6 NC_006146.1 + 4479 0.66 0.949051
Target:  5'- -gGGGGCUGGuuacgugucuuguGGAGAUGGcacuggcgggccagcGGGGGGUg -3'
miRNA:   3'- gaCCCCGACCc------------UUUCUACC---------------UUUCCCG- -5'
28764 3' -54.6 NC_006146.1 + 133491 0.66 0.949051
Target:  5'- -cGGGGUgaaacaGGGAGGGuucgcgGGGcuuGGGGCc -3'
miRNA:   3'- gaCCCCGa-----CCCUUUCua----CCUu--UCCCG- -5'
28764 3' -54.6 NC_006146.1 + 55810 0.66 0.948625
Target:  5'- -cGGGGC-GGuGGAAGAggccgucccggccUGGGu-GGGCg -3'
miRNA:   3'- gaCCCCGaCC-CUUUCU-------------ACCUuuCCCG- -5'
28764 3' -54.6 NC_006146.1 + 109352 0.66 0.944685
Target:  5'- -cGGGGUgGGGAAuAGAcaGcGAGGGCg -3'
miRNA:   3'- gaCCCCGaCCCUU-UCUacCuUUCCCG- -5'
28764 3' -54.6 NC_006146.1 + 163575 0.66 0.944685
Target:  5'- --aGGGCgugGGGGAAGucacUGGcauGGGCa -3'
miRNA:   3'- gacCCCGa--CCCUUUCu---ACCuuuCCCG- -5'
28764 3' -54.6 NC_006146.1 + 101816 0.66 0.944685
Target:  5'- -cGGGGUaacgagGGGAGgcGGAaauUGGAGcAGGGUu -3'
miRNA:   3'- gaCCCCGa-----CCCUU--UCU---ACCUU-UCCCG- -5'
28764 3' -54.6 NC_006146.1 + 53822 0.66 0.944685
Target:  5'- -gGGGGCUGGaAGAGucgGGcGAAGGuGUg -3'
miRNA:   3'- gaCCCCGACCcUUUCua-CC-UUUCC-CG- -5'
28764 3' -54.6 NC_006146.1 + 104475 0.66 0.944685
Target:  5'- gCUGGGGCUGaugucuGAG-UGGAAAaGGCc -3'
miRNA:   3'- -GACCCCGACccu---UUCuACCUUUcCCG- -5'
28764 3' -54.6 NC_006146.1 + 6388 0.66 0.944685
Target:  5'- -cGGGGCgGuGGAAAGccacGGGAAGGaGUu -3'
miRNA:   3'- gaCCCCGaC-CCUUUCua--CCUUUCC-CG- -5'
28764 3' -54.6 NC_006146.1 + 71355 0.66 0.944235
Target:  5'- gCUGGGGUgccagUGGGAaccgucgucuccuGAcugcuGGUGGccGAGGGCg -3'
miRNA:   3'- -GACCCCG-----ACCCU-------------UU-----CUACCu-UUCCCG- -5'
28764 3' -54.6 NC_006146.1 + 69576 0.66 0.94008
Target:  5'- uCUGGug--GGGGAAGAUGGccagguccuGGGGCa -3'
miRNA:   3'- -GACCccgaCCCUUUCUACCuu-------UCCCG- -5'
28764 3' -54.6 NC_006146.1 + 167431 0.66 0.94008
Target:  5'- -cGGGGUcccGGGgcGGG-GGGucGGGCg -3'
miRNA:   3'- gaCCCCGa--CCCuuUCUaCCUuuCCCG- -5'
28764 3' -54.6 NC_006146.1 + 159907 0.66 0.94008
Target:  5'- -cGGGGCccucGAAGAUGG--GGGGCa -3'
miRNA:   3'- gaCCCCGacccUUUCUACCuuUCCCG- -5'
28764 3' -54.6 NC_006146.1 + 24199 0.66 0.94008
Target:  5'- -gGaGGGCUGGGccugcGAGGuucuguUGGGGccGGGGCc -3'
miRNA:   3'- gaC-CCCGACCC-----UUUCu-----ACCUU--UCCCG- -5'
28764 3' -54.6 NC_006146.1 + 169295 0.66 0.94008
Target:  5'- -cGGGGUcccGGGgcGGG-GGGucGGGCg -3'
miRNA:   3'- gaCCCCGa--CCCuuUCUaCCUuuCCCG- -5'
28764 3' -54.6 NC_006146.1 + 168363 0.66 0.94008
Target:  5'- -cGGGGUcccGGGgcGGG-GGGucGGGCg -3'
miRNA:   3'- gaCCCCGa--CCCuuUCUaCCUuuCCCG- -5'
28764 3' -54.6 NC_006146.1 + 170226 0.66 0.94008
Target:  5'- -cGGGGUcccGGGgcGGG-GGGucGGGCg -3'
miRNA:   3'- gaCCCCGa--CCCuuUCUaCCUuuCCCG- -5'
28764 3' -54.6 NC_006146.1 + 162391 0.66 0.939606
Target:  5'- -gGGGGCuuugcccUGGGAGuaacaaguGGUGGGcacGGGCu -3'
miRNA:   3'- gaCCCCG-------ACCCUUu-------CUACCUuu-CCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.