miRNA display CGI


Results 41 - 60 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28764 5' -58.7 NC_006146.1 + 129066 0.68 0.706957
Target:  5'- cUGGCCacgGC-CCGGGUGUUuucacagaaaggggaCCGGGUGCa -3'
miRNA:   3'- -ACCGGg--CGaGGUCUACAA---------------GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 135586 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 135679 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 135771 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 135864 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 135957 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 136050 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 136143 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 136236 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 135493 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 135400 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 135307 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 8509 0.68 0.702999
Target:  5'- cUGGCCCa--CCGGG-GUcCCGGGCGCg -3'
miRNA:   3'- -ACCGGGcgaGGUCUaCAaGGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 137537 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 118928 0.68 0.68308
Target:  5'- cGGCCCGCaugCCGGAgaccUCCccgucGGCGCc -3'
miRNA:   3'- aCCGGGCGa--GGUCUaca-AGGu----CCGUG- -5'
28764 5' -58.7 NC_006146.1 + 51377 0.68 0.68308
Target:  5'- uUGGucaCCCGCUUCAGAUGagCCAG-CAUc -3'
miRNA:   3'- -ACC---GGGCGAGGUCUACaaGGUCcGUG- -5'
28764 5' -58.7 NC_006146.1 + 137898 0.68 0.68308
Target:  5'- gGGucCCCGUggacagggCCGGggGUUCCGGGgGCa -3'
miRNA:   3'- aCC--GGGCGa-------GGUCuaCAAGGUCCgUG- -5'
28764 5' -58.7 NC_006146.1 + 33201 0.68 0.702999
Target:  5'- gGGCCUccggguGCUCCuGGUGcUCCGgGGCAg -3'
miRNA:   3'- aCCGGG------CGAGGuCUACaAGGU-CCGUg -5'
28764 5' -58.7 NC_006146.1 + 128827 0.68 0.662996
Target:  5'- cGGCgCGgUCCAGGagcagGUaagcccggCCAGGCACa -3'
miRNA:   3'- aCCGgGCgAGGUCUa----CAa-------GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 135214 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.