Results 21 - 40 of 149 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28764 | 5' | -58.7 | NC_006146.1 | + | 95853 | 0.71 | 0.488605 |
Target: 5'- cUGGCCCcgGCUCCAGAUccuguacuggccccgGUUCCAGauccuGUACu -3' miRNA: 3'- -ACCGGG--CGAGGUCUA---------------CAAGGUC-----CGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 35551 | 0.71 | 0.484843 |
Target: 5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3' miRNA: 3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 35644 | 0.71 | 0.484843 |
Target: 5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3' miRNA: 3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 102334 | 0.71 | 0.503788 |
Target: 5'- aGGCCCagaucgaucucgGCUcgCCAGcgG-UCCGGGCACu -3' miRNA: 3'- aCCGGG------------CGA--GGUCuaCaAGGUCCGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 34250 | 0.71 | 0.484843 |
Target: 5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3' miRNA: 3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 34343 | 0.71 | 0.484843 |
Target: 5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3' miRNA: 3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 34901 | 0.71 | 0.484843 |
Target: 5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3' miRNA: 3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 34622 | 0.71 | 0.484843 |
Target: 5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3' miRNA: 3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 33971 | 0.71 | 0.484843 |
Target: 5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3' miRNA: 3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 34808 | 0.71 | 0.484843 |
Target: 5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3' miRNA: 3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 34715 | 0.71 | 0.484843 |
Target: 5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3' miRNA: 3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 34436 | 0.71 | 0.484843 |
Target: 5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3' miRNA: 3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 34157 | 0.71 | 0.484843 |
Target: 5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3' miRNA: 3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 34064 | 0.71 | 0.484843 |
Target: 5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3' miRNA: 3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 33879 | 0.71 | 0.484843 |
Target: 5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3' miRNA: 3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 33786 | 0.71 | 0.484843 |
Target: 5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3' miRNA: 3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 33507 | 0.71 | 0.484843 |
Target: 5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3' miRNA: 3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 33414 | 0.71 | 0.484843 |
Target: 5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3' miRNA: 3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 95782 | 0.71 | 0.48203 |
Target: 5'- cUGGCCCcgGCUCCAGAUccuguacugccccgGUUCCAGauccuGUACu -3' miRNA: 3'- -ACCGGG--CGAGGUCUA--------------CAAGGUC-----CGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 34993 | 0.71 | 0.484843 |
Target: 5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3' miRNA: 3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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