Results 41 - 60 of 149 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28764 | 5' | -58.7 | NC_006146.1 | + | 33971 | 0.71 | 0.484843 |
Target: 5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3' miRNA: 3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 95853 | 0.71 | 0.488605 |
Target: 5'- cUGGCCCcgGCUCCAGAUccuguacuggccccgGUUCCAGauccuGUACu -3' miRNA: 3'- -ACCGGG--CGAGGUCUA---------------CAAGGUC-----CGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 13185 | 0.71 | 0.494274 |
Target: 5'- cGGCCUGC-CCGGccucGcUCCGGGCGCc -3' miRNA: 3'- aCCGGGCGaGGUCua--CaAGGUCCGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 33318 | 0.71 | 0.494274 |
Target: 5'- cGGUCCugggGCUCCGGGg--UCCGGGUGCu -3' miRNA: 3'- aCCGGG----CGAGGUCUacaAGGUCCGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 28575 | 0.71 | 0.494274 |
Target: 5'- cGGCCUGC-CCGGccucGcUCCGGGCGCc -3' miRNA: 3'- aCCGGGCGaGGUCua--CaAGGUCCGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 25497 | 0.71 | 0.494274 |
Target: 5'- cGGCCUGC-CCGGccucGcUCCGGGCGCc -3' miRNA: 3'- aCCGGGCGaGGUCua--CaAGGUCCGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 22419 | 0.71 | 0.494274 |
Target: 5'- cGGCCUGC-CCGGccucGcUCCGGGCGCc -3' miRNA: 3'- aCCGGGCGaGGUCua--CaAGGUCCGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 19341 | 0.71 | 0.494274 |
Target: 5'- cGGCCUGC-CCGGccucGcUCCGGGCGCc -3' miRNA: 3'- aCCGGGCGaGGUCua--CaAGGUCCGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 16263 | 0.71 | 0.494274 |
Target: 5'- cGGCCUGC-CCGGccucGcUCCGGGCGCc -3' miRNA: 3'- aCCGGGCGaGGUCua--CaAGGUCCGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 102334 | 0.71 | 0.503788 |
Target: 5'- aGGCCCagaucgaucucgGCUcgCCAGcgG-UCCGGGCACu -3' miRNA: 3'- aCCGGG------------CGA--GGUCuaCaAGGUCCGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 137772 | 0.71 | 0.503788 |
Target: 5'- cUGGUCCGgUCCGGGUGggCCuGGUcCg -3' miRNA: 3'- -ACCGGGCgAGGUCUACaaGGuCCGuG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 168752 | 0.71 | 0.513381 |
Target: 5'- gUGGCCCGCccCCGGGUcUUCCcGGGCu- -3' miRNA: 3'- -ACCGGGCGa-GGUCUAcAAGG-UCCGug -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 167820 | 0.71 | 0.513381 |
Target: 5'- gUGGCCCGCccCCGGGUcUUCCcGGGCu- -3' miRNA: 3'- -ACCGGGCGa-GGUCUAcAAGG-UCCGug -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 169684 | 0.71 | 0.513381 |
Target: 5'- gUGGCCCGCccCCGGGUcUUCCcGGGCu- -3' miRNA: 3'- -ACCGGGCGa-GGUCUAcAAGG-UCCGug -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 150025 | 0.71 | 0.532784 |
Target: 5'- uUGGCCCGCUCCAGcaucGUGcgCCccuGCAg -3' miRNA: 3'- -ACCGGGCGAGGUC----UACaaGGuc-CGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 117399 | 0.7 | 0.542584 |
Target: 5'- cGGCCCGCagCCAGAg---CCAGaccGCACc -3' miRNA: 3'- aCCGGGCGa-GGUCUacaaGGUC---CGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 33387 | 0.7 | 0.548493 |
Target: 5'- cUGcCCCGCUCCGGGUGggggguggcccgCCuGGGCACc -3' miRNA: 3'- -ACcGGGCGAGGUCUACaa----------GG-UCCGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 65067 | 0.7 | 0.552443 |
Target: 5'- uUGGCagCGcCUCCGGAUGUcggCCGGGgACc -3' miRNA: 3'- -ACCGg-GC-GAGGUCUACAa--GGUCCgUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 118280 | 0.7 | 0.552443 |
Target: 5'- cGGCCCGgUCCAGGaagaaggagUGcUCCAgcaaauGGCGCu -3' miRNA: 3'- aCCGGGCgAGGUCU---------ACaAGGU------CCGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 163065 | 0.7 | 0.562356 |
Target: 5'- aGGUCCGa--CAGGUGUcuaCCGGGCGCc -3' miRNA: 3'- aCCGGGCgagGUCUACAa--GGUCCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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