miRNA display CGI


Results 61 - 80 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28764 5' -58.7 NC_006146.1 + 163065 0.7 0.562356
Target:  5'- aGGUCCGa--CAGGUGUcuaCCGGGCGCc -3'
miRNA:   3'- aCCGGGCgagGUCUACAa--GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 2202 0.7 0.562356
Target:  5'- aUGGUCCGCggaaaUCCAGcaGUUCCugcgccuccuGGGCACa -3'
miRNA:   3'- -ACCGGGCG-----AGGUCuaCAAGG----------UCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 157224 0.7 0.572315
Target:  5'- aGGCCCGC-CCuGAUGUUCUcaaucucauAGGUg- -3'
miRNA:   3'- aCCGGGCGaGGuCUACAAGG---------UCCGug -5'
28764 5' -58.7 NC_006146.1 + 103571 0.7 0.572315
Target:  5'- gGGCUCGC-CCGGGccUGggCCGGGCuCa -3'
miRNA:   3'- aCCGGGCGaGGUCU--ACaaGGUCCGuG- -5'
28764 5' -58.7 NC_006146.1 + 170617 0.7 0.572315
Target:  5'- gGGCCCGCccCCGGGUcUUCCcGGGCu- -3'
miRNA:   3'- aCCGGGCGa-GGUCUAcAAGG-UCCGug -5'
28764 5' -58.7 NC_006146.1 + 74415 0.69 0.602416
Target:  5'- cUGGgaguUCUGCUCCAGGUGggCCAGGa-- -3'
miRNA:   3'- -ACC----GGGCGAGGUCUACaaGGUCCgug -5'
28764 5' -58.7 NC_006146.1 + 47318 0.69 0.612502
Target:  5'- gGGCCUccuggaugaugGcCUCCAGccGggCCAGGCGCc -3'
miRNA:   3'- aCCGGG-----------C-GAGGUCuaCaaGGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 67236 0.69 0.612502
Target:  5'- -cGCCCGCcCCAGAUGcccgCCAuGCGCu -3'
miRNA:   3'- acCGGGCGaGGUCUACaa--GGUcCGUG- -5'
28764 5' -58.7 NC_006146.1 + 122556 0.69 0.612502
Target:  5'- cGGCCCGCUggCCAGAcUGgacgCCuGGCcCa -3'
miRNA:   3'- aCCGGGCGA--GGUCU-ACaa--GGuCCGuG- -5'
28764 5' -58.7 NC_006146.1 + 77547 0.69 0.621591
Target:  5'- gGGCCaCGUguacguggcgcugUCCAGGg---CCAGGCACu -3'
miRNA:   3'- aCCGG-GCG-------------AGGUCUacaaGGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 135122 0.69 0.632709
Target:  5'- gGGUuuGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- aCCGggCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 135400 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 135307 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 135214 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 128827 0.68 0.662996
Target:  5'- cGGCgCGgUCCAGGagcagGUaagcccggCCAGGCACa -3'
miRNA:   3'- aCCGgGCgAGGUCUa----CAa-------GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 167570 0.68 0.662996
Target:  5'- aGGCCCGCggagaggCCGuGUGUggaggCCGGGCc- -3'
miRNA:   3'- aCCGGGCGa------GGUcUACAa----GGUCCGug -5'
28764 5' -58.7 NC_006146.1 + 133090 0.68 0.662996
Target:  5'- gUGGuCCCGCUCCgAGAgcuuuaagCCGGGUAg -3'
miRNA:   3'- -ACC-GGGCGAGG-UCUacaa----GGUCCGUg -5'
28764 5' -58.7 NC_006146.1 + 169434 0.68 0.662996
Target:  5'- aGGCCCGCggagaggCCGuGUGUggaggCCGGGCc- -3'
miRNA:   3'- aCCGGGCGa------GGUcUACAa----GGUCCGug -5'
28764 5' -58.7 NC_006146.1 + 170365 0.68 0.662996
Target:  5'- aGGCCCGCggagaggCCGuGUGUggaggCCGGGCc- -3'
miRNA:   3'- aCCGGGCGa------GGUcUACAa----GGUCCGug -5'
28764 5' -58.7 NC_006146.1 + 168502 0.68 0.662996
Target:  5'- aGGCCCGCggagaggCCGuGUGUggaggCCGGGCc- -3'
miRNA:   3'- aCCGGGCGa------GGUcUACAa----GGUCCGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.