Results 81 - 100 of 149 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28764 | 5' | -58.7 | NC_006146.1 | + | 135864 | 0.68 | 0.662996 |
Target: 5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3' miRNA: 3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 133090 | 0.68 | 0.662996 |
Target: 5'- gUGGuCCCGCUCCgAGAgcuuuaagCCGGGUAg -3' miRNA: 3'- -ACC-GGGCGAGG-UCUacaa----GGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 167570 | 0.68 | 0.662996 |
Target: 5'- aGGCCCGCggagaggCCGuGUGUggaggCCGGGCc- -3' miRNA: 3'- aCCGGGCGa------GGUcUACAa----GGUCCGug -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 168502 | 0.68 | 0.662996 |
Target: 5'- aGGCCCGCggagaggCCGuGUGUggaggCCGGGCc- -3' miRNA: 3'- aCCGGGCGa------GGUcUACAa----GGUCCGug -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 135214 | 0.68 | 0.662996 |
Target: 5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3' miRNA: 3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 135400 | 0.68 | 0.662996 |
Target: 5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3' miRNA: 3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 136793 | 0.68 | 0.662996 |
Target: 5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3' miRNA: 3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 136608 | 0.68 | 0.662996 |
Target: 5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3' miRNA: 3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 136515 | 0.68 | 0.662996 |
Target: 5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3' miRNA: 3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 136422 | 0.68 | 0.662996 |
Target: 5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3' miRNA: 3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 136329 | 0.68 | 0.662996 |
Target: 5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3' miRNA: 3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 136236 | 0.68 | 0.662996 |
Target: 5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3' miRNA: 3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 136050 | 0.68 | 0.662996 |
Target: 5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3' miRNA: 3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 135957 | 0.68 | 0.662996 |
Target: 5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3' miRNA: 3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 136979 | 0.68 | 0.662996 |
Target: 5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3' miRNA: 3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 135771 | 0.68 | 0.662996 |
Target: 5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3' miRNA: 3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 135679 | 0.68 | 0.662996 |
Target: 5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3' miRNA: 3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 135586 | 0.68 | 0.662996 |
Target: 5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3' miRNA: 3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 135493 | 0.68 | 0.662996 |
Target: 5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3' miRNA: 3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 169434 | 0.68 | 0.662996 |
Target: 5'- aGGCCCGCggagaggCCGuGUGUggaggCCGGGCc- -3' miRNA: 3'- aCCGGGCGa------GGUcUACAa----GGUCCGug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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