Results 41 - 60 of 149 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28764 | 5' | -58.7 | NC_006146.1 | + | 34529 | 0.71 | 0.484843 |
Target: 5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3' miRNA: 3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 34622 | 0.71 | 0.484843 |
Target: 5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3' miRNA: 3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 34715 | 0.71 | 0.484843 |
Target: 5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3' miRNA: 3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 34808 | 0.71 | 0.484843 |
Target: 5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3' miRNA: 3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 34901 | 0.71 | 0.484843 |
Target: 5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3' miRNA: 3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 34993 | 0.71 | 0.484843 |
Target: 5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3' miRNA: 3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 35086 | 0.71 | 0.484843 |
Target: 5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3' miRNA: 3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 35179 | 0.71 | 0.484843 |
Target: 5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3' miRNA: 3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 35272 | 0.71 | 0.484843 |
Target: 5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3' miRNA: 3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 35365 | 0.71 | 0.484843 |
Target: 5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3' miRNA: 3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 35458 | 0.71 | 0.484843 |
Target: 5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3' miRNA: 3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 35551 | 0.71 | 0.484843 |
Target: 5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3' miRNA: 3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 35644 | 0.71 | 0.484843 |
Target: 5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3' miRNA: 3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 35737 | 0.71 | 0.484843 |
Target: 5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3' miRNA: 3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 36112 | 0.66 | 0.806492 |
Target: 5'- gGGaCCCGCUgCUGGGUGgggguuguggCCuGGGCACu -3' miRNA: 3'- aCC-GGGCGA-GGUCUACaa--------GG-UCCGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 40870 | 0.66 | 0.78329 |
Target: 5'- cGGCUCGCggUCCGGAgacggagccggggccUcGUcugcgaUCCGGGCGCg -3' miRNA: 3'- aCCGGGCG--AGGUCU---------------A-CA------AGGUCCGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 41065 | 0.66 | 0.812567 |
Target: 5'- gGGCUCGCUCggacgggggcguggCGGGUGggCCgcGGGCGa -3' miRNA: 3'- aCCGGGCGAG--------------GUCUACaaGG--UCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 42714 | 0.66 | 0.815147 |
Target: 5'- aGcGCCCGCUCgGGcUGgcagccgcggaUCCGGGCGg -3' miRNA: 3'- aC-CGGGCGAGgUCuACa----------AGGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 44381 | 0.67 | 0.751623 |
Target: 5'- --cCCCGC-CCGGGgggcgUGUggggCCGGGCACg -3' miRNA: 3'- accGGGCGaGGUCU-----ACAa---GGUCCGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 47318 | 0.69 | 0.612502 |
Target: 5'- gGGCCUccuggaugaugGcCUCCAGccGggCCAGGCGCc -3' miRNA: 3'- aCCGGG-----------C-GAGGUCuaCaaGGUCCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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