miRNA display CGI


Results 61 - 80 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28764 5' -58.7 NC_006146.1 + 50536 0.67 0.761075
Target:  5'- aGGagCCGCUCCAGGUc--CCGGGUggGCa -3'
miRNA:   3'- aCCg-GGCGAGGUCUAcaaGGUCCG--UG- -5'
28764 5' -58.7 NC_006146.1 + 51377 0.68 0.68308
Target:  5'- uUGGucaCCCGCUUCAGAUGagCCAG-CAUc -3'
miRNA:   3'- -ACC---GGGCGAGGUCUACaaGGUCcGUG- -5'
28764 5' -58.7 NC_006146.1 + 51588 0.66 0.806492
Target:  5'- gGGCCCGggggagCCAGAgGggCCAGcGUACc -3'
miRNA:   3'- aCCGGGCga----GGUCUaCaaGGUC-CGUG- -5'
28764 5' -58.7 NC_006146.1 + 51963 0.67 0.712875
Target:  5'- cUGGCgCCGacggggagguCUCCGGcAUGcgggCCGGGCGCg -3'
miRNA:   3'- -ACCG-GGC----------GAGGUC-UACaa--GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 54014 0.66 0.770416
Target:  5'- gGGCCgGCaCCAGGUGgcgccUCCGGaGgGCg -3'
miRNA:   3'- aCCGGgCGaGGUCUACa----AGGUC-CgUG- -5'
28764 5' -58.7 NC_006146.1 + 57824 0.66 0.815147
Target:  5'- aGGCCgggUGCUCCAacc--UCCAGGCAg -3'
miRNA:   3'- aCCGG---GCGAGGUcuacaAGGUCCGUg -5'
28764 5' -58.7 NC_006146.1 + 65067 0.7 0.552443
Target:  5'- uUGGCagCGcCUCCGGAUGUcggCCGGGgACc -3'
miRNA:   3'- -ACCGg-GC-GAGGUCUACAa--GGUCCgUG- -5'
28764 5' -58.7 NC_006146.1 + 67236 0.69 0.612502
Target:  5'- -cGCCCGCcCCAGAUGcccgCCAuGCGCu -3'
miRNA:   3'- acCGGGCGaGGUCUACaa--GGUcCGUG- -5'
28764 5' -58.7 NC_006146.1 + 73537 0.72 0.475498
Target:  5'- aUGGCCagGCUCCGGAgcuccCCGGGCGg -3'
miRNA:   3'- -ACCGGg-CGAGGUCUacaa-GGUCCGUg -5'
28764 5' -58.7 NC_006146.1 + 74415 0.69 0.602416
Target:  5'- cUGGgaguUCUGCUCCAGGUGggCCAGGa-- -3'
miRNA:   3'- -ACC----GGGCGAGGUCUACaaGGUCCgug -5'
28764 5' -58.7 NC_006146.1 + 77547 0.69 0.621591
Target:  5'- gGGCCaCGUguacguggcgcugUCCAGGg---CCAGGCACu -3'
miRNA:   3'- aCCGG-GCG-------------AGGUCUacaaGGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 79120 0.72 0.435504
Target:  5'- aGGCCCGCgggugCCAGcacggcaccCCAGGCACc -3'
miRNA:   3'- aCCGGGCGa----GGUCuacaa----GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 95782 0.71 0.48203
Target:  5'- cUGGCCCcgGCUCCAGAUccuguacugccccgGUUCCAGauccuGUACu -3'
miRNA:   3'- -ACCGGG--CGAGGUCUA--------------CAAGGUC-----CGUG- -5'
28764 5' -58.7 NC_006146.1 + 95853 0.71 0.488605
Target:  5'- cUGGCCCcgGCUCCAGAUccuguacuggccccgGUUCCAGauccuGUACu -3'
miRNA:   3'- -ACCGGG--CGAGGUCUA---------------CAAGGUC-----CGUG- -5'
28764 5' -58.7 NC_006146.1 + 98396 0.67 0.732419
Target:  5'- -cGUCCGCUCCuccgcAGGcgcUGcagCCAGGCACg -3'
miRNA:   3'- acCGGGCGAGG-----UCU---ACaa-GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 99450 0.67 0.712875
Target:  5'- aGGCCCucGCUCCucg-GcgCCAGGUGCc -3'
miRNA:   3'- aCCGGG--CGAGGucuaCaaGGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 102334 0.71 0.503788
Target:  5'- aGGCCCagaucgaucucgGCUcgCCAGcgG-UCCGGGCACu -3'
miRNA:   3'- aCCGGG------------CGA--GGUCuaCaAGGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 103571 0.7 0.572315
Target:  5'- gGGCUCGC-CCGGGccUGggCCGGGCuCa -3'
miRNA:   3'- aCCGGGCGaGGUCU--ACaaGGUCCGuG- -5'
28764 5' -58.7 NC_006146.1 + 110495 0.72 0.475498
Target:  5'- cGGCCaGgUCCAGGagggugcagaUGUucUCCAGGCGCu -3'
miRNA:   3'- aCCGGgCgAGGUCU----------ACA--AGGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 111861 0.73 0.387539
Target:  5'- cGGCCCGCUgcgcccucaccgCCAGcgGUgcguucaCCAGGCAg -3'
miRNA:   3'- aCCGGGCGA------------GGUCuaCAa------GGUCCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.