Results 81 - 100 of 149 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28764 | 5' | -58.7 | NC_006146.1 | + | 112730 | 0.72 | 0.457084 |
Target: 5'- aGGCCCGUguacaggCAGGUGgUCgAGGCGCa -3' miRNA: 3'- aCCGGGCGag-----GUCUACaAGgUCCGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 116084 | 0.67 | 0.726588 |
Target: 5'- uUGGCCCGCccuccgCCGGGUccUCUccaacgagcugcccaAGGCGCg -3' miRNA: 3'- -ACCGGGCGa-----GGUCUAcaAGG---------------UCCGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 117031 | 0.66 | 0.767626 |
Target: 5'- -cGCCCGCUCCcaguAGGUGUUgaugcacagggccaCCagAGGUACa -3' miRNA: 3'- acCGGGCGAGG----UCUACAA--------------GG--UCCGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 117399 | 0.7 | 0.542584 |
Target: 5'- cGGCCCGCagCCAGAg---CCAGaccGCACc -3' miRNA: 3'- aCCGGGCGa-GGUCUacaaGGUC---CGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 118280 | 0.7 | 0.552443 |
Target: 5'- cGGCCCGgUCCAGGaagaaggagUGcUCCAgcaaauGGCGCu -3' miRNA: 3'- aCCGGGCgAGGUCU---------ACaAGGU------CCGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 118928 | 0.68 | 0.68308 |
Target: 5'- cGGCCCGCaugCCGGAgaccUCCccgucGGCGCc -3' miRNA: 3'- aCCGGGCGa--GGUCUaca-AGGu----CCGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 120014 | 0.66 | 0.788729 |
Target: 5'- aGGCcgcacCCGCggCCAG----UCCGGGCACa -3' miRNA: 3'- aCCG-----GGCGa-GGUCuacaAGGUCCGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 122556 | 0.69 | 0.612502 |
Target: 5'- cGGCCCGCUggCCAGAcUGgacgCCuGGCcCa -3' miRNA: 3'- aCCGGGCGA--GGUCU-ACaa--GGuCCGuG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 127448 | 0.74 | 0.363313 |
Target: 5'- aGGCugCCGCUCCAGAUGUggcggCCcgcAGGCuACu -3' miRNA: 3'- aCCG--GGCGAGGUCUACAa----GG---UCCG-UG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 127637 | 0.72 | 0.43906 |
Target: 5'- cGGCCCGCUgCCucuUG-UCCAGGcCGCg -3' miRNA: 3'- aCCGGGCGA-GGucuACaAGGUCC-GUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 128827 | 0.68 | 0.662996 |
Target: 5'- cGGCgCGgUCCAGGagcagGUaagcccggCCAGGCACa -3' miRNA: 3'- aCCGgGCgAGGUCUa----CAa-------GGUCCGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 129066 | 0.68 | 0.706957 |
Target: 5'- cUGGCCacgGC-CCGGGUGUUuucacagaaaggggaCCGGGUGCa -3' miRNA: 3'- -ACCGGg--CGaGGUCUACAA---------------GGUCCGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 129563 | 0.67 | 0.761075 |
Target: 5'- aGGCCCuGggCCAGAUaggUUgGGGCGCg -3' miRNA: 3'- aCCGGG-CgaGGUCUAca-AGgUCCGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 132488 | 0.67 | 0.742067 |
Target: 5'- aGGCCCGCUaaucCCAGAUGccaccaccCCAuGCAUc -3' miRNA: 3'- aCCGGGCGA----GGUCUACaa------GGUcCGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 132635 | 1.1 | 0.001369 |
Target: 5'- gUGGCCCGCUCCAGAUGUUCCAGGCACa -3' miRNA: 3'- -ACCGGGCGAGGUCUACAAGGUCCGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 133058 | 0.66 | 0.770416 |
Target: 5'- cUGGCgU-CUCCAGGgugGUUCCGGGUg- -3' miRNA: 3'- -ACCGgGcGAGGUCUa--CAAGGUCCGug -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 133090 | 0.68 | 0.662996 |
Target: 5'- gUGGuCCCGCUCCgAGAgcuuuaagCCGGGUAg -3' miRNA: 3'- -ACC-GGGCGAGG-UCUacaa----GGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 135122 | 0.69 | 0.632709 |
Target: 5'- gGGUuuGCUCCGGcgGgggguggCCGGGcCGCu -3' miRNA: 3'- aCCGggCGAGGUCuaCaa-----GGUCC-GUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 135214 | 0.68 | 0.662996 |
Target: 5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3' miRNA: 3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 135307 | 0.68 | 0.662996 |
Target: 5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3' miRNA: 3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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