miRNA display CGI


Results 21 - 40 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28764 5' -58.7 NC_006146.1 + 140711 0.67 0.722685
Target:  5'- cUGGCuCCGCUCCucaAUGUgCCcaAGGUGCa -3'
miRNA:   3'- -ACCG-GGCGAGGuc-UACAaGG--UCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 137898 0.68 0.68308
Target:  5'- gGGucCCCGUggacagggCCGGggGUUCCGGGgGCa -3'
miRNA:   3'- aCC--GGGCGa-------GGUCuaCAAGGUCCgUG- -5'
28764 5' -58.7 NC_006146.1 + 137801 0.67 0.731449
Target:  5'- cGGaUCCGCUUCGGggGUccgccggUCCGGuGCACc -3'
miRNA:   3'- aCC-GGGCGAGGUCuaCA-------AGGUC-CGUG- -5'
28764 5' -58.7 NC_006146.1 + 137772 0.71 0.503788
Target:  5'- cUGGUCCGgUCCGGGUGggCCuGGUcCg -3'
miRNA:   3'- -ACCGGGCgAGGUCUACaaGGuCCGuG- -5'
28764 5' -58.7 NC_006146.1 + 137537 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 137444 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 137351 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 137258 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 137177 0.67 0.712875
Target:  5'- cGGaCCggaggaGCUCCAGAacggggGUaggCCGGGCACa -3'
miRNA:   3'- aCC-GGg-----CGAGGUCUa-----CAa--GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 137165 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 137072 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 136990 0.66 0.797684
Target:  5'- cGGaCCggaggaGCUCCAGGacggggGUaggCCGGGCACa -3'
miRNA:   3'- aCC-GGg-----CGAGGUCUa-----CAa--GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 136979 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 136886 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 136793 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 136608 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 136515 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 136422 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 136329 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 136236 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.