miRNA display CGI


Results 41 - 60 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28764 5' -58.7 NC_006146.1 + 136143 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 136050 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 135957 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 135864 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 135771 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 135679 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 135586 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 135493 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 135400 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 135307 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 135214 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 135122 0.69 0.632709
Target:  5'- gGGUuuGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- aCCGggCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 133090 0.68 0.662996
Target:  5'- gUGGuCCCGCUCCgAGAgcuuuaagCCGGGUAg -3'
miRNA:   3'- -ACC-GGGCGAGG-UCUacaa----GGUCCGUg -5'
28764 5' -58.7 NC_006146.1 + 133058 0.66 0.770416
Target:  5'- cUGGCgU-CUCCAGGgugGUUCCGGGUg- -3'
miRNA:   3'- -ACCGgGcGAGGUCUa--CAAGGUCCGug -5'
28764 5' -58.7 NC_006146.1 + 132635 1.1 0.001369
Target:  5'- gUGGCCCGCUCCAGAUGUUCCAGGCACa -3'
miRNA:   3'- -ACCGGGCGAGGUCUACAAGGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 132488 0.67 0.742067
Target:  5'- aGGCCCGCUaaucCCAGAUGccaccaccCCAuGCAUc -3'
miRNA:   3'- aCCGGGCGA----GGUCUACaa------GGUcCGUG- -5'
28764 5' -58.7 NC_006146.1 + 129563 0.67 0.761075
Target:  5'- aGGCCCuGggCCAGAUaggUUgGGGCGCg -3'
miRNA:   3'- aCCGGG-CgaGGUCUAca-AGgUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 129066 0.68 0.706957
Target:  5'- cUGGCCacgGC-CCGGGUGUUuucacagaaaggggaCCGGGUGCa -3'
miRNA:   3'- -ACCGGg--CGaGGUCUACAA---------------GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 128827 0.68 0.662996
Target:  5'- cGGCgCGgUCCAGGagcagGUaagcccggCCAGGCACa -3'
miRNA:   3'- aCCGgGCgAGGUCUa----CAa-------GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 127637 0.72 0.43906
Target:  5'- cGGCCCGCUgCCucuUG-UCCAGGcCGCg -3'
miRNA:   3'- aCCGGGCGA-GGucuACaAGGUCC-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.