miRNA display CGI


Results 61 - 80 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28764 5' -58.7 NC_006146.1 + 127448 0.74 0.363313
Target:  5'- aGGCugCCGCUCCAGAUGUggcggCCcgcAGGCuACu -3'
miRNA:   3'- aCCG--GGCGAGGUCUACAa----GG---UCCG-UG- -5'
28764 5' -58.7 NC_006146.1 + 122556 0.69 0.612502
Target:  5'- cGGCCCGCUggCCAGAcUGgacgCCuGGCcCa -3'
miRNA:   3'- aCCGGGCGA--GGUCU-ACaa--GGuCCGuG- -5'
28764 5' -58.7 NC_006146.1 + 120014 0.66 0.788729
Target:  5'- aGGCcgcacCCGCggCCAG----UCCGGGCACa -3'
miRNA:   3'- aCCG-----GGCGa-GGUCuacaAGGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 118928 0.68 0.68308
Target:  5'- cGGCCCGCaugCCGGAgaccUCCccgucGGCGCc -3'
miRNA:   3'- aCCGGGCGa--GGUCUaca-AGGu----CCGUG- -5'
28764 5' -58.7 NC_006146.1 + 118280 0.7 0.552443
Target:  5'- cGGCCCGgUCCAGGaagaaggagUGcUCCAgcaaauGGCGCu -3'
miRNA:   3'- aCCGGGCgAGGUCU---------ACaAGGU------CCGUG- -5'
28764 5' -58.7 NC_006146.1 + 117399 0.7 0.542584
Target:  5'- cGGCCCGCagCCAGAg---CCAGaccGCACc -3'
miRNA:   3'- aCCGGGCGa-GGUCUacaaGGUC---CGUG- -5'
28764 5' -58.7 NC_006146.1 + 117031 0.66 0.767626
Target:  5'- -cGCCCGCUCCcaguAGGUGUUgaugcacagggccaCCagAGGUACa -3'
miRNA:   3'- acCGGGCGAGG----UCUACAA--------------GG--UCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 116084 0.67 0.726588
Target:  5'- uUGGCCCGCccuccgCCGGGUccUCUccaacgagcugcccaAGGCGCg -3'
miRNA:   3'- -ACCGGGCGa-----GGUCUAcaAGG---------------UCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 112730 0.72 0.457084
Target:  5'- aGGCCCGUguacaggCAGGUGgUCgAGGCGCa -3'
miRNA:   3'- aCCGGGCGag-----GUCUACaAGgUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 111861 0.73 0.387539
Target:  5'- cGGCCCGCUgcgcccucaccgCCAGcgGUgcguucaCCAGGCAg -3'
miRNA:   3'- aCCGGGCGA------------GGUCuaCAa------GGUCCGUg -5'
28764 5' -58.7 NC_006146.1 + 110495 0.72 0.475498
Target:  5'- cGGCCaGgUCCAGGagggugcagaUGUucUCCAGGCGCu -3'
miRNA:   3'- aCCGGgCgAGGUCU----------ACA--AGGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 103571 0.7 0.572315
Target:  5'- gGGCUCGC-CCGGGccUGggCCGGGCuCa -3'
miRNA:   3'- aCCGGGCGaGGUCU--ACaaGGUCCGuG- -5'
28764 5' -58.7 NC_006146.1 + 102334 0.71 0.503788
Target:  5'- aGGCCCagaucgaucucgGCUcgCCAGcgG-UCCGGGCACu -3'
miRNA:   3'- aCCGGG------------CGA--GGUCuaCaAGGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 99450 0.67 0.712875
Target:  5'- aGGCCCucGCUCCucg-GcgCCAGGUGCc -3'
miRNA:   3'- aCCGGG--CGAGGucuaCaaGGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 98396 0.67 0.732419
Target:  5'- -cGUCCGCUCCuccgcAGGcgcUGcagCCAGGCACg -3'
miRNA:   3'- acCGGGCGAGG-----UCU---ACaa-GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 95853 0.71 0.488605
Target:  5'- cUGGCCCcgGCUCCAGAUccuguacuggccccgGUUCCAGauccuGUACu -3'
miRNA:   3'- -ACCGGG--CGAGGUCUA---------------CAAGGUC-----CGUG- -5'
28764 5' -58.7 NC_006146.1 + 95782 0.71 0.48203
Target:  5'- cUGGCCCcgGCUCCAGAUccuguacugccccgGUUCCAGauccuGUACu -3'
miRNA:   3'- -ACCGGG--CGAGGUCUA--------------CAAGGUC-----CGUG- -5'
28764 5' -58.7 NC_006146.1 + 79120 0.72 0.435504
Target:  5'- aGGCCCGCgggugCCAGcacggcaccCCAGGCACc -3'
miRNA:   3'- aCCGGGCGa----GGUCuacaa----GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 77547 0.69 0.621591
Target:  5'- gGGCCaCGUguacguggcgcugUCCAGGg---CCAGGCACu -3'
miRNA:   3'- aCCGG-GCG-------------AGGUCUacaaGGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 74415 0.69 0.602416
Target:  5'- cUGGgaguUCUGCUCCAGGUGggCCAGGa-- -3'
miRNA:   3'- -ACC----GGGCGAGGUCUACaaGGUCCgug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.