miRNA display CGI


Results 61 - 80 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28764 5' -58.7 NC_006146.1 + 135771 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 150025 0.71 0.532784
Target:  5'- uUGGCCCGCUCCAGcaucGUGcgCCccuGCAg -3'
miRNA:   3'- -ACCGGGCGAGGUC----UACaaGGuc-CGUg -5'
28764 5' -58.7 NC_006146.1 + 118280 0.7 0.552443
Target:  5'- cGGCCCGgUCCAGGaagaaggagUGcUCCAgcaaauGGCGCu -3'
miRNA:   3'- aCCGGGCgAGGUCU---------ACaAGGU------CCGUG- -5'
28764 5' -58.7 NC_006146.1 + 157224 0.7 0.572315
Target:  5'- aGGCCCGC-CCuGAUGUUCUcaaucucauAGGUg- -3'
miRNA:   3'- aCCGGGCGaGGuCUACAAGG---------UCCGug -5'
28764 5' -58.7 NC_006146.1 + 135122 0.69 0.632709
Target:  5'- gGGUuuGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- aCCGggCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 168502 0.68 0.662996
Target:  5'- aGGCCCGCggagaggCCGuGUGUggaggCCGGGCc- -3'
miRNA:   3'- aCCGGGCGa------GGUcUACAa----GGUCCGug -5'
28764 5' -58.7 NC_006146.1 + 169434 0.68 0.662996
Target:  5'- aGGCCCGCggagaggCCGuGUGUggaggCCGGGCc- -3'
miRNA:   3'- aCCGGGCGa------GGUcUACAa----GGUCCGug -5'
28764 5' -58.7 NC_006146.1 + 128827 0.68 0.662996
Target:  5'- cGGCgCGgUCCAGGagcagGUaagcccggCCAGGCACa -3'
miRNA:   3'- aCCGgGCgAGGUCUa----CAa-------GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 135214 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 41065 0.66 0.812567
Target:  5'- gGGCUCGCUCggacgggggcguggCGGGUGggCCgcGGGCGa -3'
miRNA:   3'- aCCGGGCGAG--------------GUCUACaaGG--UCCGUg -5'
28764 5' -58.7 NC_006146.1 + 133058 0.66 0.770416
Target:  5'- cUGGCgU-CUCCAGGgugGUUCCGGGUg- -3'
miRNA:   3'- -ACCGgGcGAGGUCUa--CAAGGUCCGug -5'
28764 5' -58.7 NC_006146.1 + 169508 0.67 0.761075
Target:  5'- gGGCCCgGCgcgugCCGGggGacCCGGGgGCg -3'
miRNA:   3'- aCCGGG-CGa----GGUCuaCaaGGUCCgUG- -5'
28764 5' -58.7 NC_006146.1 + 136143 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 136422 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 137072 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 137351 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 33201 0.68 0.702999
Target:  5'- gGGCCUccggguGCUCCuGGUGcUCCGgGGCAg -3'
miRNA:   3'- aCCGGG------CGAGGuCUACaAGGU-CCGUg -5'
28764 5' -58.7 NC_006146.1 + 33953 0.67 0.722685
Target:  5'- gGGUCCGCuggUCCGGGUGggCguGGUccGCu -3'
miRNA:   3'- aCCGGGCG---AGGUCUACaaGguCCG--UG- -5'
28764 5' -58.7 NC_006146.1 + 44381 0.67 0.751623
Target:  5'- --cCCCGC-CCGGGgggcgUGUggggCCGGGCACg -3'
miRNA:   3'- accGGGCGaGGUCU-----ACAa---GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 135586 0.68 0.662996
Target:  5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3'
miRNA:   3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.