Results 81 - 100 of 149 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28764 | 5' | -58.7 | NC_006146.1 | + | 51588 | 0.66 | 0.806492 |
Target: 5'- gGGCCCGggggagCCAGAgGggCCAGcGUACc -3' miRNA: 3'- aCCGGGCga----GGUCUaCaaGGUC-CGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 34064 | 0.71 | 0.484843 |
Target: 5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3' miRNA: 3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 34157 | 0.71 | 0.484843 |
Target: 5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3' miRNA: 3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 33971 | 0.71 | 0.484843 |
Target: 5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3' miRNA: 3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 33879 | 0.71 | 0.484843 |
Target: 5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3' miRNA: 3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 21775 | 0.66 | 0.792328 |
Target: 5'- -cGCCCGCccaccauucuaagcCCAGcgGgaugCCGGGCGCg -3' miRNA: 3'- acCGGGCGa-------------GGUCuaCaa--GGUCCGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 33786 | 0.71 | 0.484843 |
Target: 5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3' miRNA: 3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 33693 | 0.71 | 0.484843 |
Target: 5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3' miRNA: 3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 103571 | 0.7 | 0.572315 |
Target: 5'- gGGCUCGC-CCGGGccUGggCCGGGCuCa -3' miRNA: 3'- aCCGGGCGaGGUCU--ACaaGGUCCGuG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 74415 | 0.69 | 0.602416 |
Target: 5'- cUGGgaguUCUGCUCCAGGUGggCCAGGa-- -3' miRNA: 3'- -ACC----GGGCGAGGUCUACaaGGUCCgug -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 67236 | 0.69 | 0.612502 |
Target: 5'- -cGCCCGCcCCAGAUGcccgCCAuGCGCu -3' miRNA: 3'- acCGGGCGaGGUCUACaa--GGUcCGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 77547 | 0.69 | 0.621591 |
Target: 5'- gGGCCaCGUguacguggcgcugUCCAGGg---CCAGGCACu -3' miRNA: 3'- aCCGG-GCG-------------AGGUCUacaaGGUCCGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 51377 | 0.68 | 0.68308 |
Target: 5'- uUGGucaCCCGCUUCAGAUGagCCAG-CAUc -3' miRNA: 3'- -ACC---GGGCGAGGUCUACaaGGUCcGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 112730 | 0.72 | 0.457084 |
Target: 5'- aGGCCCGUguacaggCAGGUGgUCgAGGCGCa -3' miRNA: 3'- aCCGGGCGag-----GUCUACaAGgUCCGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 73537 | 0.72 | 0.475498 |
Target: 5'- aUGGCCagGCUCCGGAgcuccCCGGGCGg -3' miRNA: 3'- -ACCGGg-CGAGGUCUacaa-GGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 122556 | 0.69 | 0.612502 |
Target: 5'- cGGCCCGCUggCCAGAcUGgacgCCuGGCcCa -3' miRNA: 3'- aCCGGGCGA--GGUCU-ACaa--GGuCCGuG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 95782 | 0.71 | 0.48203 |
Target: 5'- cUGGCCCcgGCUCCAGAUccuguacugccccgGUUCCAGauccuGUACu -3' miRNA: 3'- -ACCGGG--CGAGGUCUA--------------CAAGGUC-----CGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 33414 | 0.71 | 0.484843 |
Target: 5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3' miRNA: 3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 33507 | 0.71 | 0.484843 |
Target: 5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3' miRNA: 3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 33600 | 0.71 | 0.484843 |
Target: 5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3' miRNA: 3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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