miRNA display CGI


Results 61 - 80 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28764 5' -58.7 NC_006146.1 + 77547 0.69 0.621591
Target:  5'- gGGCCaCGUguacguggcgcugUCCAGGg---CCAGGCACu -3'
miRNA:   3'- aCCGG-GCG-------------AGGUCUacaaGGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 51377 0.68 0.68308
Target:  5'- uUGGucaCCCGCUUCAGAUGagCCAG-CAUc -3'
miRNA:   3'- -ACC---GGGCGAGGUCUACaaGGUCcGUG- -5'
28764 5' -58.7 NC_006146.1 + 13226 0.67 0.736289
Target:  5'- aGGCCUGCggCCAGAcccaGUucuacaucagccuggUCCAGGgGCu -3'
miRNA:   3'- aCCGGGCGa-GGUCUa---CA---------------AGGUCCgUG- -5'
28764 5' -58.7 NC_006146.1 + 116084 0.67 0.726588
Target:  5'- uUGGCCCGCccuccgCCGGGUccUCUccaacgagcugcccaAGGCGCg -3'
miRNA:   3'- -ACCGGGCGa-----GGUCUAcaAGG---------------UCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 137177 0.67 0.712875
Target:  5'- cGGaCCggaggaGCUCCAGAacggggGUaggCCGGGCACa -3'
miRNA:   3'- aCC-GGg-----CGAGGUCUa-----CAa--GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 129066 0.68 0.706957
Target:  5'- cUGGCCacgGC-CCGGGUGUUuucacagaaaggggaCCGGGUGCa -3'
miRNA:   3'- -ACCGGg--CGaGGUCUACAA---------------GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 15431 0.68 0.702999
Target:  5'- cUGGCCCgGCUgCAGuccugCCuGGCGCa -3'
miRNA:   3'- -ACCGGG-CGAgGUCuacaaGGuCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 8509 0.68 0.702999
Target:  5'- cUGGCCCa--CCGGG-GUcCCGGGCGCg -3'
miRNA:   3'- -ACCGGGcgaGGUCUaCAaGGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 118928 0.68 0.68308
Target:  5'- cGGCCCGCaugCCGGAgaccUCCccgucGGCGCc -3'
miRNA:   3'- aCCGGGCGa--GGUCUaca-AGGu----CCGUG- -5'
28764 5' -58.7 NC_006146.1 + 25497 0.71 0.494274
Target:  5'- cGGCCUGC-CCGGccucGcUCCGGGCGCc -3'
miRNA:   3'- aCCGGGCGaGGUCua--CaAGGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 22419 0.71 0.494274
Target:  5'- cGGCCUGC-CCGGccucGcUCCGGGCGCc -3'
miRNA:   3'- aCCGGGCGaGGUCua--CaAGGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 19341 0.71 0.494274
Target:  5'- cGGCCUGC-CCGGccucGcUCCGGGCGCc -3'
miRNA:   3'- aCCGGGCGaGGUCua--CaAGGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 16263 0.71 0.494274
Target:  5'- cGGCCUGC-CCGGccucGcUCCGGGCGCc -3'
miRNA:   3'- aCCGGGCGaGGUCua--CaAGGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 13185 0.71 0.494274
Target:  5'- cGGCCUGC-CCGGccucGcUCCGGGCGCc -3'
miRNA:   3'- aCCGGGCGaGGUCua--CaAGGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 110495 0.72 0.475498
Target:  5'- cGGCCaGgUCCAGGagggugcagaUGUucUCCAGGCGCu -3'
miRNA:   3'- aCCGGgCgAGGUCU----------ACA--AGGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 33265 0.72 0.469934
Target:  5'- cUGcCCCGCUCCGGGUGggggguggcccggCUGGGCACc -3'
miRNA:   3'- -ACcGGGCGAGGUCUACaa-----------GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 33141 0.72 0.469934
Target:  5'- cUGcCCCGCUCCGGGUGggggguggcccggCUGGGCACc -3'
miRNA:   3'- -ACcGGGCGAGGUCUACaa-----------GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 79120 0.72 0.435504
Target:  5'- aGGCCCGCgggugCCAGcacggcaccCCAGGCACc -3'
miRNA:   3'- aCCGGGCGa----GGUCuacaa----GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 2769 0.74 0.371271
Target:  5'- aGGCCCaaGC-CCGGAUGUcagggaagacgCCAGGCGCc -3'
miRNA:   3'- aCCGGG--CGaGGUCUACAa----------GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 42714 0.66 0.815147
Target:  5'- aGcGCCCGCUCgGGcUGgcagccgcggaUCCGGGCGg -3'
miRNA:   3'- aC-CGGGCGAGgUCuACa----------AGGUCCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.