miRNA display CGI


Results 21 - 40 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28764 5' -58.7 NC_006146.1 + 54014 0.66 0.770416
Target:  5'- gGGCCgGCaCCAGGUGgcgccUCCGGaGgGCg -3'
miRNA:   3'- aCCGGgCGaGGUCUACa----AGGUC-CgUG- -5'
28764 5' -58.7 NC_006146.1 + 117031 0.66 0.767626
Target:  5'- -cGCCCGCUCCcaguAGGUGUUgaugcacagggccaCCagAGGUACa -3'
miRNA:   3'- acCGGGCGAGG----UCUACAA--------------GG--UCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 168576 0.67 0.761075
Target:  5'- gGGCCCgGCgcgugCCGGggGacCCGGGgGCg -3'
miRNA:   3'- aCCGGG-CGa----GGUCuaCaaGGUCCgUG- -5'
28764 5' -58.7 NC_006146.1 + 50536 0.67 0.761075
Target:  5'- aGGagCCGCUCCAGGUc--CCGGGUggGCa -3'
miRNA:   3'- aCCg-GGCGAGGUCUAcaaGGUCCG--UG- -5'
28764 5' -58.7 NC_006146.1 + 169508 0.67 0.761075
Target:  5'- gGGCCCgGCgcgugCCGGggGacCCGGGgGCg -3'
miRNA:   3'- aCCGGG-CGa----GGUCuaCaaGGUCCgUG- -5'
28764 5' -58.7 NC_006146.1 + 170439 0.67 0.761075
Target:  5'- gGGCCCgGCgcgugCCGGggGacCCGGGgGCg -3'
miRNA:   3'- aCCGGG-CGa----GGUCuaCaaGGUCCgUG- -5'
28764 5' -58.7 NC_006146.1 + 129563 0.67 0.761075
Target:  5'- aGGCCCuGggCCAGAUaggUUgGGGCGCg -3'
miRNA:   3'- aCCGGG-CgaGGUCUAca-AGgUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 44381 0.67 0.751623
Target:  5'- --cCCCGC-CCGGGgggcgUGUggggCCGGGCACg -3'
miRNA:   3'- accGGGCGaGGUCU-----ACAa---GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 33163 0.67 0.751623
Target:  5'- cGGaCCCccaggaGCUCCAGAaccggGUaggcCCGGGCACc -3'
miRNA:   3'- aCC-GGG------CGAGGUCUa----CAa---GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 33767 0.67 0.751623
Target:  5'- gGGUCCGCuggUCCGGGUGggCguGGUcCg -3'
miRNA:   3'- aCCGGGCG---AGGUCUACaaGguCCGuG- -5'
28764 5' -58.7 NC_006146.1 + 132488 0.67 0.742067
Target:  5'- aGGCCCGCUaaucCCAGAUGccaccaccCCAuGCAUc -3'
miRNA:   3'- aCCGGGCGA----GGUCUACaa------GGUcCGUG- -5'
28764 5' -58.7 NC_006146.1 + 13226 0.67 0.736289
Target:  5'- aGGCCUGCggCCAGAcccaGUucuacaucagccuggUCCAGGgGCu -3'
miRNA:   3'- aCCGGGCGa-GGUCUa---CA---------------AGGUCCgUG- -5'
28764 5' -58.7 NC_006146.1 + 98396 0.67 0.732419
Target:  5'- -cGUCCGCUCCuccgcAGGcgcUGcagCCAGGCACg -3'
miRNA:   3'- acCGGGCGAGG-----UCU---ACaa-GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 137801 0.67 0.731449
Target:  5'- cGGaUCCGCUUCGGggGUccgccggUCCGGuGCACc -3'
miRNA:   3'- aCC-GGGCGAGGUCuaCA-------AGGUC-CGUG- -5'
28764 5' -58.7 NC_006146.1 + 116084 0.67 0.726588
Target:  5'- uUGGCCCGCccuccgCCGGGUccUCUccaacgagcugcccaAGGCGCg -3'
miRNA:   3'- -ACCGGGCGa-----GGUCUAcaAGG---------------UCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 33953 0.67 0.722685
Target:  5'- gGGUCCGCuggUCCGGGUGggCguGGUccGCu -3'
miRNA:   3'- aCCGGGCG---AGGUCUACaaGguCCG--UG- -5'
28764 5' -58.7 NC_006146.1 + 140711 0.67 0.722685
Target:  5'- cUGGCuCCGCUCCucaAUGUgCCcaAGGUGCa -3'
miRNA:   3'- -ACCG-GGCGAGGuc-UACAaGG--UCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 99450 0.67 0.712875
Target:  5'- aGGCCCucGCUCCucg-GcgCCAGGUGCc -3'
miRNA:   3'- aCCGGG--CGAGGucuaCaaGGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 137177 0.67 0.712875
Target:  5'- cGGaCCggaggaGCUCCAGAacggggGUaggCCGGGCACa -3'
miRNA:   3'- aCC-GGg-----CGAGGUCUa-----CAa--GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 51963 0.67 0.712875
Target:  5'- cUGGCgCCGacggggagguCUCCGGcAUGcgggCCGGGCGCg -3'
miRNA:   3'- -ACCG-GGC----------GAGGUC-UACaa--GGUCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.