miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28765 3' -54.3 NC_006146.1 + 170177 0.69 0.8496
Target:  5'- -gGCUGAgGGGGCUcccgaGGGCGGGGccggggCCUGg -3'
miRNA:   3'- agUGAUU-CCUUGA-----CCUGCCCCa-----GGAC- -5'
28765 3' -54.3 NC_006146.1 + 169246 0.69 0.8496
Target:  5'- -gGCUGAgGGGGCUcccgaGGGCGGGGccggggCCUGg -3'
miRNA:   3'- agUGAUU-CCUUGA-----CCUGCCCCa-----GGAC- -5'
28765 3' -54.3 NC_006146.1 + 168314 0.69 0.8496
Target:  5'- -gGCUGAgGGGGCUcccgaGGGCGGGGccggggCCUGg -3'
miRNA:   3'- agUGAUU-CCUUGA-----CCUGCCCCa-----GGAC- -5'
28765 3' -54.3 NC_006146.1 + 167382 0.69 0.8496
Target:  5'- -gGCUGAgGGGGCUcccgaGGGCGGGGccggggCCUGg -3'
miRNA:   3'- agUGAUU-CCUUGA-----CCUGCCCCa-----GGAC- -5'
28765 3' -54.3 NC_006146.1 + 164329 0.73 0.672007
Target:  5'- gUCACUGAG--ACUGGGCGGGGUg--- -3'
miRNA:   3'- -AGUGAUUCcuUGACCUGCCCCAggac -5'
28765 3' -54.3 NC_006146.1 + 162449 0.68 0.900063
Target:  5'- aCACUGAGGuuuacACUGGGgaaauUGGGGUCg-- -3'
miRNA:   3'- aGUGAUUCCu----UGACCU-----GCCCCAGgac -5'
28765 3' -54.3 NC_006146.1 + 161758 0.74 0.645389
Target:  5'- -gGCUGAGGuccgagggggcgcCUGGGCGGGGgCCUGa -3'
miRNA:   3'- agUGAUUCCuu-----------GACCUGCCCCaGGAC- -5'
28765 3' -54.3 NC_006146.1 + 158576 0.66 0.963507
Target:  5'- -gGCgAGGGGACUGaGGCGGG--CCUGa -3'
miRNA:   3'- agUGaUUCCUUGAC-CUGCCCcaGGAC- -5'
28765 3' -54.3 NC_006146.1 + 155497 0.66 0.963507
Target:  5'- -gGCgAGGGGACUGaGGCGGG--CCUGa -3'
miRNA:   3'- agUGaUUCCUUGAC-CUGCCCcaGGAC- -5'
28765 3' -54.3 NC_006146.1 + 152419 0.66 0.963507
Target:  5'- -gGCgAGGGGACUGaGGCGGG--CCUGa -3'
miRNA:   3'- agUGaUUCCUUGAC-CUGCCCcaGGAC- -5'
28765 3' -54.3 NC_006146.1 + 149341 0.66 0.963507
Target:  5'- -gGCgAGGGGACUGaGGCGGG--CCUGa -3'
miRNA:   3'- agUGaUUCCUUGAC-CUGCCCcaGGAC- -5'
28765 3' -54.3 NC_006146.1 + 146263 0.66 0.963507
Target:  5'- -gGCgAGGGGACUGaGGCGGG--CCUGa -3'
miRNA:   3'- agUGaUUCCUUGAC-CUGCCCcaGGAC- -5'
28765 3' -54.3 NC_006146.1 + 143185 0.66 0.963507
Target:  5'- -gGCgAGGGGACUGaGGCGGG--CCUGa -3'
miRNA:   3'- agUGaUUCCUUGAC-CUGCCCcaGGAC- -5'
28765 3' -54.3 NC_006146.1 + 137214 0.67 0.923865
Target:  5'- aCACcccgggGAGGaAGCcgGGugGGGG-CCUGg -3'
miRNA:   3'- aGUGa-----UUCC-UUGa-CCugCCCCaGGAC- -5'
28765 3' -54.3 NC_006146.1 + 137027 0.67 0.923865
Target:  5'- aCACcccgggGAGGAgGCcgGGugGGGG-CCUGg -3'
miRNA:   3'- aGUGa-----UUCCU-UGa-CCugCCCCaGGAC- -5'
28765 3' -54.3 NC_006146.1 + 136986 0.69 0.886751
Target:  5'- cCACcggaccgGAGGAGCUccaGGACGGGGguaggCCg- -3'
miRNA:   3'- aGUGa------UUCCUUGA---CCUGCCCCa----GGac -5'
28765 3' -54.3 NC_006146.1 + 132350 1.08 0.005381
Target:  5'- gUCACUAAGGAACUGGACGGGGUCCUGc -3'
miRNA:   3'- -AGUGAUUCCUUGACCUGCCCCAGGAC- -5'
28765 3' -54.3 NC_006146.1 + 127145 0.69 0.886751
Target:  5'- cCGCgu-GGAGCUGGACGGcGUCa-- -3'
miRNA:   3'- aGUGauuCCUUGACCUGCCcCAGgac -5'
28765 3' -54.3 NC_006146.1 + 123354 0.66 0.963507
Target:  5'- cUCGCcgAGGGAgcucuggcGCUGGcCGGGGgccccgcaaCCUGg -3'
miRNA:   3'- -AGUGa-UUCCU--------UGACCuGCCCCa--------GGAC- -5'
28765 3' -54.3 NC_006146.1 + 122484 0.69 0.865099
Target:  5'- gUUGCUcGGGGACgGcGGCGGGGUCgaGa -3'
miRNA:   3'- -AGUGAuUCCUUGaC-CUGCCCCAGgaC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.